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(-) Description

Title :  SECRETED PROTEIN HCP3 FROM PSEUDOMONAS AERUGINOSA.
 
Authors :  J. Osipiuk, X. Xu, H. Cui, A. Savchenko, A. M. Edwards, A. Joachimiak, Mi Center For Structural Genomics (Mcsg)
Date :  07 May 09  (Deposition) - 16 Jun 09  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (3x)
Biol. Unit 2:  C,D  (3x)
Biol. Unit 3:  E,F  (3x)
Keywords :  Structural Genomics, Apc22128, Hcp3, Hcpc, Secretion, Virulence, Psi- 2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Secreted, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, X. Xu, H. Cui, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Secretory Protein Hcp3 From Pseudomona Aeruginosa.
J. Struct. Funct. Genom. V. 12 21 2011
PubMed-ID: 21476004  |  Reference-DOI: 10.1007/S10969-011-9107-1

(-) Compounds

Molecule 1 - MAJOR EXPORTED HCP3 PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B MODIFIED
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HCPC, PA0263
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Strain: PAO1
    Synonym: SECRETED PROTEIN HCP

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (3x): AB    
Biological Unit 2 (3x):   CD  
Biological Unit 3 (3x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric Unit (2, 20)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 21)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 21)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR C:160 , SER C:161 , HOH C:305 , HOH C:612BINDING SITE FOR RESIDUE GOL C 301
2AC2SOFTWAREARG F:63 , ASP F:164 , ASP F:165BINDING SITE FOR RESIDUE GOL F 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HE1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HE1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HE1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HE1)

(-) Exons   (0, 0)

(no "Exon" information available for 3HE1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
 aligned with MAJE_PSEAE | Q9HI36 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:167
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
           MAJE_PSEAE     2 ATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRS 168
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee......hhhhhhhhh.......eee.eee..ee..-----------.ee..eeeeee...hhhhhhhhhhhh.eeeeeeeeeeee.....eeeeeeeeeeeeeeeeeeeee.---------..eeeeeeee..eeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3he1 A   2 ATPAYmSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVmVQGFNHEVIIP-----------RVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYmH---------FTHLEDVHFTYRKITWTHEVSGTSGSDDWRS 168
                                 |  11        21        31        41        51         - |      71        81        91       101       111       121     ||  -      |141       151       161       
                                 7-MSE                           40-MSE     51          63                                                             127-MSE    138                              
                                                                                                                                                        128                                        


Chain B from PDB  Type:PROTEIN  Length:143
 aligned with MAJE_PSEAE | Q9HI36 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:164
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    
           MAJE_PSEAE     4 PAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWR 167
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...ee......hhhhhhhhh.......eee.eeeeeee.----------...ee..eeeeee..hhhhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeeeeeeeeeeeee.-----------..eeeeeee..eeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3he1 B   4 PAYmSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVmVQGFNHEVII----------GQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYm-----------THLEDVHFTYRKITWTHEVSGTSGSDDWR 167
                               |    13        23        33      | 43      |  -       |63        73        83        93       103       113       123   |     -     | 143       153       163    
                               7-MSE                           40-MSE    50         61                                                               127-MSE     139                            


Chain C from PDB  Type:PROTEIN  Length:147
 aligned with MAJE_PSEAE | Q9HI36 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:167
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
           MAJE_PSEAE     2 ATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRS 168
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee......hhhhhhhhh.......eee.eeeeeee..-----------.ee..eeeeee...hhhhhhhhhhhh.eeeeeeeeeeee.....eeeeeeeeeeeeeeeeeeeee.---------..eeeeeeee..eeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3he1 C   2 ATPAYmSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVmVQGFNHEVIIP-----------RVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYmH---------FTHLEDVHFTYRKITWTHEVSGTSGSDDWRS 168
                                 |  11        21        31        41        51         - |      71        81        91       101       111       121     ||  -      |141       151       161       
                                 7-MSE                           40-MSE     51          63                                                             127-MSE    138                              
                                                                                                                                                        128                                        


Chain D from PDB  Type:PROTEIN  Length:143
 aligned with MAJE_PSEAE | Q9HI36 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:164
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    
           MAJE_PSEAE     4 PAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWR 167
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...ee......hhhhhhhhh.......ee..eee..ee.----------...ee..eeeeee...hhhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeeeeeeeeeeeee.-----------..eeeeeee..eeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3he1 D   4 PAYmSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVmVQGFNHEVII----------GQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYm-----------THLEDVHFTYRKITWTHEVSGTSGSDDWR 167
                               |    13        23        33      | 43      |  -       |63        73        83        93       103       113       123   |     -     | 143       153       163    
                               7-MSE                           40-MSE    50         61                                                               127-MSE     139                            


Chain E from PDB  Type:PROTEIN  Length:147
 aligned with MAJE_PSEAE | Q9HI36 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:167
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
           MAJE_PSEAE     2 ATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRS 168
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...ee......hhhhhhhhh.......eee.eee..ee..-----------.ee..eeeeee...hhhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeeeeeeeeeeeeee.---------..eeeeeeee..eeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3he1 E   2 ATPAYmSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVmVQGFNHEVIIP-----------RVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYmH---------FTHLEDVHFTYRKITWTHEVSGTSGSDDWRS 168
                                 |  11        21        31        41        51         - |      71        81        91       101       111       121     ||  -      |141       151       161       
                                 7-MSE                           40-MSE     51          63                                                             127-MSE    138                              
                                                                                                                                                        128                                        


Chain F from PDB  Type:PROTEIN  Length:143
 aligned with MAJE_PSEAE | Q9HI36 from UniProtKB/Swiss-Prot  Length:172

    Alignment length:164
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    
           MAJE_PSEAE     4 PAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWR 167
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...ee......hhhhhhhhh.......eee.eeeeeee.----------...ee..eeeeee..hhhhhhhhhhhhh..eeeeeeeeeee.....eeeeeeeeeeeeeeeeeeee.-----------..eeeeeee..eeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3he1 F   4 PAYmSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVmVQGFNHEVII----------GQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYm-----------THLEDVHFTYRKITWTHEVSGTSGSDDWR 167
                               |    13        23        33      | 43      |  -       |63        73        83        93       103       113       123   |     -     | 143       153       163    
                               7-MSE                           40-MSE    50         61                                                               127-MSE     139
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HE1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HE1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HE1)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MAJE_PSEAE | Q9HI36)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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