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Title :   CRYSTAL STRUCTURE OF PUTATIVE GLYCOSYL HYDROLASE, WAS DOMAIN OF UNKNOWN FUNCTION (DUF1080) (YP_001302580.1) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.36 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   04 May 09 (Deposition) - 26 May 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.36

Chains :   Asym./Biol. Unit : A

Keywords :   Yp_001302580. 1, Putative Glycosyl Hydrolase, Was Domain Of Unknown Function (Duf1080), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Glycosyl Hydrolase, Was Domai Of Unknown Function (Duf1080) (Yp_001302580. 1) From Parabacteroides Distasonis Atcc 8503 At 2. 36 A Resolution
To Be Published
PubMed: search

Compounds

Molecule 1 - PUTATIVE GLYCOSYL HYDROLASE
	Atcc	:	8503
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BDI_1195, YP_001302580.1
	Organism Scientific	:	PARABACTEROIDES DISTASONIS ATCC 8503
	Organism Taxid	:	435591

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:200 , ARG A:216 , GLU A:243 , HOH A:328	BINDING SITE FOR RESIDUE SO4 A 1
2	AC2	SOFTWARE	LYS A:128 , TYR A:142 , LYS A:229 , TYR A:230 , TYR A:235 , HOH A:272	BINDING SITE FOR RESIDUE SO4 A 2
3	AC3	SOFTWARE	ASN A:124 , SER A:125 , GLU A:145 , GLN A:147 , TYR A:173 , GLN A:252	BINDING SITE FOR RESIDUE EDO A 3
4	AC4	SOFTWARE	LYS A:71 , ASP A:72 , ALA A:73	BINDING SITE FOR RESIDUE EDO A 4
5	AC5	SOFTWARE	ASN A:199	BINDING SITE FOR RESIDUE EDO A 5
6	AC6	SOFTWARE	HIS A:201 , GLU A:215 , HOH A:309	BINDING SITE FOR RESIDUE EDO A 6

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:231
 aligned with A6LB94_PARD8 | A6LB94 from UniProtKB/TrEMBL  Length:269

    Alignment length:231
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 
         A6LB94_PARD8    39 TPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGWMVKDGELIVQKSDGSESTNGGDIVTEGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLKKSENIHFNGVGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGDEVAFRNIKVKELK 269
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh.eee.........eee..........eeee..eeee.....hhhhh...eee......eeeeeeeee....eeeeeeee............eeeeee.......................................eeeeeeee....eeeeee..eeeeeee..hhhhhhhhhhhhhhhhhhh...........eeee......eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hbk A  39 TPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGWmVKDGELIVQKSDGSESTNGGDIVTEGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLKKSENIHFNGVGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGDEVAFRNIKVKELK 269
                                    48        58        68        78 |      88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268 
                                                                    80-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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