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Title :   CRYSTAL STRUCTURE OF CHOLOYLGLYCINE HYDROLASE FROM BACTEROIDES THETAIOTAOMICRON VPI

Authors :   Y. Kim, L. Bigelow, K. Buck, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)

Date :   04 May 09 (Deposition) - 02 Jun 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.27

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Alpha-Beta Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, L. Bigelow, K. Buck, A. Joachimiak
Crystal Structure Of Choloylglycine Hydrolase From Bacteroides Thetaiotaomicron Vpi
To Be Published
PubMed: search

Molecule 1 - CHOLOYLGLYCINE HYDROLASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PMCSG19
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	CGH 26-342
	Gene	:	BT_2086
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Organism Taxid	:	818
	Strain	:	VPI-5482

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 20)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	4	Ligand/Ion	GLYCEROL
3	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 80)

No.	Name	Count	Type	Full Name
1	EDO	16	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	16	Ligand/Ion	GLYCEROL
3	MSE	48	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:59 , LYS A:77 , GLU A:96 , LYS A:97 , HOH A:366	BINDING SITE FOR RESIDUE GOL A 2
2	AC2	SOFTWARE	EDO A:9 , ILE A:188 , HIS A:189 , GLU A:204	BINDING SITE FOR RESIDUE GOL A 4
3	AC3	SOFTWARE	ALA A:64 , GLY A:65 , HIS A:66 , ASN A:67	BINDING SITE FOR RESIDUE GOL A 5
4	AC4	SOFTWARE	TYR A:293 , TRP A:304 , ASP A:306	BINDING SITE FOR RESIDUE EDO A 7
5	AC5	SOFTWARE	THR A:84 , THR A:90 , ILE A:125	BINDING SITE FOR RESIDUE EDO A 8
6	AC6	SOFTWARE	GOL A:4 , LYS A:145 , ILE A:188	BINDING SITE FOR RESIDUE EDO A 9

(no "SS Bond" information available for 3HBC)

Asymmetric Unit

No.	Residues
1	Ser A:200	-	Pro A:201

(no "SAP(SNP)/Variant" information available for 3HBC)

(no "PROSITE Motif" information available for 3HBC)

(no "Exon" information available for 3HBC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:309
 aligned with Q8A600_BACTN | Q8A600 from UniProtKB/TrEMBL  Length:352

    Alignment length:320
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342
         Q8A600_BACTN    23 AGACTRAVYLGPDRMVVTGRTMDWKEDIMSNIYVFPRGMQRAGHNKEKTVNWTSKYGSVIATGYDIGTCDGMNEKGLVASLLFLPESVYSLPGDTRPAMGISIWTQYVLDNFATVREAVDEMKKETFRIDAPRMPNGGPESTLHMAITDETGNTAVIEYLDGKLSIHEGKEYQVMTNSPRYELQLAVNDYWKEVGGLQMLPGTNRSSDRFVRASFYIHAIPQTADAKIAVPSVLSVMRNVSVPFGINTPEKPHISSTRWRSVSDQKNKVYYFESTLTPNLFWLDLKKIDFSPKAGVKKLSLTKGEIYAGDAVKDLKDSQS 342
               SCOP domains d3hbca_ A: automated matc  hes                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....eeeeeeeee.--...eeeee....eee........eee....eeeeee...eeeeeee....eeeeee..............eee..hhhhhhhhhh.hhhhhhhhhh....eee....------..eeeeee.....eeeeeee..eeeeee.....ee....hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh........---....eeeeeeeee....eeeeee......eeee.hhh........eee.........ee.hhhhee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hbc A  23 SNACTRAVYLGPDRmVVTGRTmDWK--ImSNIYVFPRGmQRAGHNKEKTVNWTSKYGSVIATGYDIGTCDGmNEKGLVASLLFLPESVYSLPGDTRPAmGISIWTQYVLDNFATVREAVDEmKKETFRIDAPRm------STLHmAITDETGNTAVIEYLDGKLSIHEGKEYQVmTNSPRYELQLAVNDYWKEVGGLQmLPGTNRSSDRFVRASFYIHAIPQTADAKIAVPSVLSVmRNVSVPFGINT---PHISSTRWRSVSDQKNKVYYFESTLTPNLFWLDLKKIDFSPKAGVKKLSLTKGEIYAGDAVKDLKDSQS 342
                                    32    |   42 |  |  |52        62        72        82        92 |     102       112       122       132       142 |     152   |     -|   |  172       182       192    |  202       212       222       232       242       252      |262       | - |     282       292       302       312       322       332       342
                                         37-MSE 44-MSE50|        61-MSE                           94-MSE                    121-MSE                144-MSE     156-MSE163   |                           197-MSE                 221-MSE                               259-MSE    270 274                                                                    
                                                       51-MSE                                                                                                             167-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ntn hydrolase-like (356)

Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) (352)

Family: automated matches (34)

Protein domain: automated matches (34)

Bacteroides thetaiotaomicron [TaxId: 818] (1)

d3hbca_

(no "CATH Domain" information available for 3HBC)

(no "Pfam Domain" information available for 3HBC)

Asymmetric Unit(hide GO term definitions)

Chain A (Q8A600_BACTN | Q8A600)

molecular function
	GO:0016787		hydrolase activity		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016811		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides		Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amide.

Asymmetric Unit
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	Sites
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		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ser A:200 - Pro A:201	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 20)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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