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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PSPTO_3016 PROTEIN FROM PSEUDOMONAS SYRINGAE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PSR293
 
Authors :  J. Seetharaman, S. Lew, F. Forouhar, H. Hamilton, R. Xiao, C. Ciccosant E. L. Foote, L. Zhao, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Mo J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (N
Date :  30 Apr 09  (Deposition) - 19 May 09  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.51
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Alpha-Beta Protein. , Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Feldmann, J. Seetharaman, T. A. Ramelot, S. Lew, L. Zhao, K. Hamilton, C. Ciccosanti, R. Xiao, T. B. Acton, J. K. Everett, L. Tong G. T. Montelione, M. A. Kennedy
Solution Nmr And X-Ray Crystal Structures Of Pseudomonas Syringae Pspto_3016 From Protein Domain Family Pf04237 (Duf419) Adopt A "Double Wing" Dna Binding Motif.
J. Struct. Funct. Genom. V. 13 155 2012
PubMed-ID: 22865330  |  Reference-DOI: 10.1007/S10969-012-9140-8

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN PSPTO_3016
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PSPTO3016, PSPTO_3016
    Organism Scientific: PSEUDOMONAS SYRINGAE PV. TOMATO
    Organism Taxid: 323
    Strain: DC3000

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3H9X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H9X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3H9X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H9X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H9X)

(-) Exons   (0, 0)

(no "Exon" information available for 3H9X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
 aligned with Q880Y4_PSESM | Q880Y4 from UniProtKB/TrEMBL  Length:117

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
         Q880Y4_PSESM     1 MNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLMDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............eeee......eeeeeeeee.hhhh.....eeeeeeee....hhhhhh....eee........eeeee.....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3h9x A   1 mNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLmDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHmNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
                            |       10        20        30        40   |    50        60        70        80     |  90       100       110       
                            |                                         44-MSE                                    86-MSE                           
                            1-MSE                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:117
 aligned with Q880Y4_PSESM | Q880Y4 from UniProtKB/TrEMBL  Length:117

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
         Q880Y4_PSESM     1 MNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLMDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............eeee......eeeeeeeee.hhhh.....eeeeeeee....hhhhhh....eee........eeeee.....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3h9x B   1 mNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLmDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHmNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
                            |       10        20        30        40   |    50        60        70        80     |  90       100       110       
                            1-MSE                                     44-MSE                                    86-MSE                           


Chain C from PDB  Type:PROTEIN  Length:117
 aligned with Q880Y4_PSESM | Q880Y4 from UniProtKB/TrEMBL  Length:117

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
         Q880Y4_PSESM     1 MNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLMDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............eeee......eeeeeeeee.hhhh.....eeeeeeee....hhhhhh....eee........eeeee.....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3h9x C   1 mNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLmDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHmNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
                            |       10        20        30        40   |    50        60        70        80     |  90       100       110       
                            1-MSE                                     44-MSE                                    86-MSE                           


Chain D from PDB  Type:PROTEIN  Length:117
 aligned with Q880Y4_PSESM | Q880Y4 from UniProtKB/TrEMBL  Length:117

    Alignment length:117
                                    10        20        30        40        50        60        70        80        90       100       110       
         Q880Y4_PSESM     1 MNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLMDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............eeee......eeeeeeeee.hhhh.....eeeeeeee....hhhhhh....eee........eeeee.....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 3h9x D   1 mNRQQFIDYAQKKYDTKPDHPWEKFPDYAVFRHSDNDKWYALLmDIPAEKIGINGDKRVDVIDLKVQPELVGSLRKKPGIYPAYHmNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR 117
                            |       10        20        30        40   |    50        60        70        80     |  90       100       110       
                            1-MSE                                     44-MSE                                    86-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H9X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H9X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H9X)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q880Y4_PSESM | Q880Y4)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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        Q880Y4_PSESM | Q880Y4: 2kfp

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