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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN WITH DOUBLE-STRANDED BETA-HELIX DOMAIN (YP_001338853.1) FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578 AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Apr 09  (Deposition) - 12 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Yp_001338853. 1, Uncharacterized Conserved Protein With Double- Stranded Beta-Helix Domain, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Cupin Domain, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uncharacterized Conserved Protein With Double-Stranded Beta-Helix Domain (Yp_001338853. 1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED CONSERVED PROTEIN WITH DOUBLE-STRANDED BETA-HELIX DOMAIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: KPN78578_51600, KPN_PKPN5P08243, YP_001338853.1
    Organism Scientific: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578
    Organism Taxid: 272620

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2GOL1Ligand/IonGLYCEROL
3MSE3Mod. Amino AcidSELENOMETHIONINE
4SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:58 , ALA A:117 , GLY A:118 , HOH A:136BINDING SITE FOR RESIDUE SO4 A 208
2AC2SOFTWAREASN A:4 , THR B:80 , HIS B:81 , HOH B:165 , HOH B:179 , HOH B:202BINDING SITE FOR RESIDUE SO4 B 209
3AC3SOFTWARESER A:23 , ASN A:24 , GLY A:25 , HOH A:172 , GLU B:10 , HOH B:129BINDING SITE FOR RESIDUE GOL B 210
4AC4SOFTWAREARG A:29 , TRP A:43 , ILE A:51 , ALA A:52 , PHE A:119 , ASN B:24BINDING SITE FOR RESIDUE 2PE B 211

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H8U)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:102 -Pro A:103
2Ala A:113 -Pro A:114
3Ala B:113 -Pro B:114

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H8U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H8U)

(-) Exons   (0, 0)

(no "Exon" information available for 3H8U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
 aligned with A6TJ50_KLEP7 | A6TJ50 from UniProtKB/TrEMBL  Length:124

    Alignment length:122
                                    12        22        32        42        52        62        72        82        92       102       112       122  
         A6TJ50_KLEP7     3 VNMRAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPGNAGFALAEK 124
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeehhhhh.........eeeee....eeeeeee....eeeeee....eeeeeeee.eeeee.....eeeee..eeeee.....eeeee.....eeeeeeee......ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8u A   3 VNmRAETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAmNSGPEPFIFVSVVAPGNAGFALAEK 124
                              |     12        22        32        42        52        62        72        82        92      |102       112       122  
                              |                                                                                            99-MSE                     
                              5-MSE                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:115
 aligned with A6TJ50_KLEP7 | A6TJ50 from UniProtKB/TrEMBL  Length:124

    Alignment length:115
                                    19        29        39        49        59        69        79        89        99       109       119     
         A6TJ50_KLEP7    10 ESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPGNAGFALAEK 124
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeehhhhh.........eeeee....eeeeeee....eeeeee....eeeeeeee.eeeee.....eeeee..eeeee.....eeee......eeeeeeee......ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8u B  10 ESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAmNSGPEPFIFVSVVAPGNAGFALAEK 124
                                    19        29        39        49        59        69        79        89        99       109       119     
                                                                                                                    99-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H8U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H8U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H8U)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3H8U)

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  Cis Peptide Bonds
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    Gly A:102 - Pro A:103   [ RasMol ]  
 

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