3H83 - JenaLib

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Title :   2.06 ANGSTROM RESOLUTION STRUCTURE OF A HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE (HPT-1) FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'

Authors :   A. S. Halavaty, L. Shuvalova, G. Minasov, I. Dubrovska, S. N. Peterson, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)

Date :   28 Apr 09 (Deposition) - 12 May 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.06

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Hypoxanthine-Guanine Phosphoribosyltransferase, Structural Genomics, Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Glycosyltransferase, Transferase, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. S. Halavaty, L. Shuvalova, G. Minasov, I. Dubrovska, S. N. Peterson W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 06 Angstrom Resolution Structure Of A Hypoxanthine-Guanin Phosphoribosyltransferase (Hpt-1) From Bacillus Anthracis Str. 'Ames Ancestor'
To Be Published
PubMed: search

Molecule 1 - HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BAS0063, BA_0063, HPT-1
	Organism Common	:	ANTHRAX,ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'
	Organism Taxid	:	261594
	Strain	:	AMES ANCESTOR

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 13)

No.	Name	Count	Type	Full Name
1	PO4	10	Ligand/Ion	PHOSPHATE ION
2	SUC	3	Ligand/Ion	SUCROSE

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:19 , GLU A:22 , LEU A:23 , ILE A:26 , TYR A:143 , VAL A:144 , GLY A:145 , HOH A:195 , HOH A:222 , HOH A:253 , HOH A:425 , HOH A:509	BINDING SITE FOR RESIDUE SUC A 181
02	AC2	SOFTWARE	ILE A:101 , VAL A:153 , LEU A:158 , ASP A:159 , TYR A:160 , LYS A:161 , PO4 A:184 , HOH A:559 , HOH A:561 , HOH A:563 , HOH A:564 , HOH A:591 , HOH A:592	BINDING SITE FOR RESIDUE SUC A 182
03	AC3	SOFTWARE	ASP A:103 , SER A:104 , GLY A:105 , HOH A:207 , HOH A:585	BINDING SITE FOR RESIDUE PO4 A 183
04	AC4	SOFTWARE	LEU A:42 , LYS A:43 , GLY A:44 , ASP A:159 , ARG A:165 , SUC A:182 , HOH A:586 , HOH A:680	BINDING SITE FOR RESIDUE PO4 A 184
05	AC5	SOFTWARE	GLN A:17 , ASP A:51 , LYS A:54 , HOH A:335 , HOH A:484 , GLN B:17 , ASP B:51 , LYS B:54	BINDING SITE FOR RESIDUE PO4 A 185
06	AC6	SOFTWARE	VAL B:153 , LEU B:158 , ASP B:159 , PO4 B:183 , HOH B:663 , HOH B:679 , HOH B:692 , HOH B:713 , HOH B:714 , HOH B:715	BINDING SITE FOR RESIDUE SUC B 181
07	AC7	SOFTWARE	ILE B:102 , ASP B:103 , SER B:104 , GLY B:105 , HOH B:577 , HOH B:587 , HOH B:588	BINDING SITE FOR RESIDUE PO4 B 182
08	AC8	SOFTWARE	LYS B:43 , GLY B:44 , ASP B:159 , ARG B:165 , SUC B:181 , HOH B:330 , HOH B:590	BINDING SITE FOR RESIDUE PO4 B 183
09	AC9	SOFTWARE	ILE C:102 , ASP C:103 , SER C:104 , GLY C:105 , HOH C:580 , HOH C:581 , HOH C:582	BINDING SITE FOR RESIDUE PO4 C 181
10	BC1	SOFTWARE	LYS C:43 , GLY C:44 , ASP C:159 , ARG C:165 , HOH C:360 , HOH C:571 , HOH C:572 , HOH C:621	BINDING SITE FOR RESIDUE PO4 C 182
11	BC2	SOFTWARE	ILE D:102 , ASP D:103 , SER D:104 , GLY D:105 , HOH D:578 , HOH D:584	BINDING SITE FOR RESIDUE PO4 D 181
12	BC3	SOFTWARE	LEU D:42 , LYS D:43 , GLY D:44 , ASP D:159 , ARG D:165 , HOH D:583 , HOH D:648 , HOH D:690 , HOH D:694	BINDING SITE FOR RESIDUE PO4 D 182
13	BC4	SOFTWARE	GLN C:17 , LYS C:54 , GLN D:17 , LYS D:54 , ARG D:55 , HOH D:277 , HOH D:373 , HOH D:664	BINDING SITE FOR RESIDUE PO4 D 183

(no "SS Bond" information available for 3H83)

Asymmetric/Biological Unit

No.	Residues
1	His A:-17	-	Ser A:-16
2	Leu A:42	-	Lys A:43
3	Leu B:42	-	Lys B:43
4	Leu C:42	-	Lys C:43
5	Leu D:42	-	Lys D:43

(no "SAP(SNP)/Variant" information available for 3H83)

(no "PROSITE Motif" information available for 3H83)

(no "Exon" information available for 3H83)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:198
 aligned with Q81VX6_BACAN | Q81VX6 from UniProtKB/TrEMBL  Length:180

    Alignment length:198
                                               1                                                                                                                                                                                  
                                     -         1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
         Q81VX6_BACAN     - -------------------MMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
               SCOP domains d3h83a_ A: automated matches                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....eeeee....hhhh.eeeeeehhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhh.....eeeeeeeee.hhhhhhhh.eeeee.........eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.hhhh.......eeeee.....ee...............eeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3h83 A -23 MHHHHHHSGTENLYFQSNAMMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
                                   |-9         1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
                                 -16|                                                                                                                                                                                             
                                  -10

Chain B from PDB  Type:PROTEIN  Length:188
 aligned with Q81VX6_BACAN | Q81VX6 from UniProtKB/TrEMBL  Length:180

    Alignment length:188
                                     1                                                                                                                                                                                  
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
         Q81VX6_BACAN     - ---------MMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
               SCOP domains d3h83b_ B: automated matches                                                                                                                                                                 SCOP domains
               CATH domains 3h83B00 B:-8-179  [code=3.40.50.2020, no name defined]                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhh.eeeeeehhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhh.....eeeeeeeee..hhhhhhh.eeeee.........eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.hhhh.......eeeee.....ee...............eeee.hhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h83 B  -8 ENLYFQSNAMMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171

Chain C from PDB  Type:PROTEIN  Length:180
 aligned with Q81VX6_BACAN | Q81VX6 from UniProtKB/TrEMBL  Length:180

    Alignment length:180
                             1                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
         Q81VX6_BACAN     - -MMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
               SCOP domains d3h83c_ C: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhh.eeeeeehhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhh.....eeeeeeeee.hhhhhhhh.eeeee.........eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.hhhh.......eeeee......................eeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3h83 C   0 AMMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179

Chain D from PDB  Type:PROTEIN  Length:180
 aligned with Q81VX6_BACAN | Q81VX6 from UniProtKB/TrEMBL  Length:180

    Alignment length:180
                             1                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
         Q81VX6_BACAN     - -MMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
               SCOP domains d3h83d_ D: automated matches                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhh.eeeeeehhhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhh.....eeeeeeeee...hhhhhh.eeeee.........eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.hhhh.......eeeee......................eeeehhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3h83 D   0 AMMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVYS 179
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PRTase-like (145)

Superfamily: PRTase-like (145)

Family: automated matches (39)

Protein domain: automated matches (39)

Bacillus anthracis [TaxId: 261594] (6)

1a	d3h83a_	A:
1b	d3h83b_	B:
1c	d3h83c_	C:
1d	d3h83d_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.2020, no name defined] (117)

'ames ancestor' (Bacillus anthracis str) (1)

3h83B00

B:-8-179

(no "Pfam Domain" information available for 3H83)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (Q81VX6_BACAN | Q81VX6)

molecular function
	GO:0004422	hypoxanthine phosphoribosyltransferase activity	Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0009116	nucleoside metabolic process	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
	GO:0006166	purine ribonucleoside salvage	Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		His A:-17 - Ser A:-16	[ RasMol ]
		Leu A:42 - Lys A:43	[ RasMol ]
		Leu B:42 - Lys B:43	[ RasMol ]
		Leu C:42 - Lys C:43	[ RasMol ]
		Leu D:42 - Lys D:43	[ RasMol ]

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	3h83
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	Q81VX6_BACAN \| Q81VX6	:	3hvu

1yfz	NOVEL IMP BINDING IN FEEDBACK INHIBITION OF HYPOXANTHINE- GUANINE PHOSPHORIBOSYLTRANSFERASE FROM THERMOANAEROBACTER TENGCONGENSIS RELATED ID: IDP01892 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 13)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 4)

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