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(-) Description

Title :  CRYSTAL STRUCTURE OF A PERIPLASMIC SUGAR-BINDING PROTEIN FROM THE PSEUDOMONAS FLUORESCENS
 
Authors :  D. Kumaran, A. Mahmood, S. K. Burley, S. Swaminathan, New York Sgx Re Center For Structural Genomics (Nysgxrc)
Date :  24 Apr 09  (Deposition) - 12 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Structure Initiative Ii (Psi Ii), Sugar Binding Protein, Alpha/Beta Fold, Two Domain Architecture, 11233I, Nysgxrc, Structural Genomics, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kumaran, A. Mahmood, S. K. Burley, S. Swaminathan
Crystal Structure Of A Periplasmic Sugar-Binding Protein From The Pseudomonas Fluorescens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PERIPLASMIC SUGAR-BINDING DOMAIN PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PFL_3664
    Organism Scientific: PSEUDOMONAS FLUORESCENS PF-5
    Organism Taxid: 220664
    Strain: ATCC BAA-477

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:27 , HOH A:45 , TRP A:67 , ARG A:92 , ALA A:195 , TRP A:223 , HOH A:397 , GOL A:402 , HOH A:471BINDING SITE FOR RESIDUE SO4 A 400
2AC2SOFTWAREARG A:216 , ARG A:238 , HOH A:466 , HOH A:559BINDING SITE FOR RESIDUE SO4 A 401
3AC3SOFTWAREHOH A:10 , ARG A:199 , ASN A:249 , ASN A:277 , HIS A:298 , SO4 A:400 , HOH A:613BINDING SITE FOR RESIDUE GOL A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H75)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:323 -Pro A:324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H75)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H75)

(-) Exons   (0, 0)

(no "Exon" information available for 3H75)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
 aligned with Q4KAG7_PSEF5 | Q4KAG7 from UniProtKB/TrEMBL  Length:361

    Alignment length:340
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
         Q4KAG7_PSEF5    22 ATSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEALQALIDGKLSVLEAGHFTLGGWALVALHDDALGLDARRLGGPDWQLSLFQALTPAQARQLLRLGDQVGTRVDFRGLSAQGKPDSYRYPFGLQLLLR 361
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhh....eeeeee........------------.eeeee.hhhhhhhhhhhhhhhhhh.......eeeeeee....hhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh........eeeee..hhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhh..........eee....ee.hhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h75 A  -1 LTSVVFLNPGNSTETFWVSYSQFmQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLmLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQR------------WIGSmVGDDEEAGYRmLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEmALGAmQAARELGRKPGTDLLFSGVNSSPEALQALIDGKLSVLEAGHFTLGGWALVALHDDALGLDARRLGGPDWQLSLFQALTPAQARQLLRLGDQVGTRVDFRGLSAQGKPDSYRYPFGLQLLLR 378
                            ||      60        70   |    80        90       100       110    |  120       130       140        |-         - |   | 158      |168       178       188       198       208       218       228       238       248   |   258       268       278       288       298       308       318       328       338       348       358       368       378
                            ||                    74-MSE                                  115-MSE                           149          150   |        165-MSE                                                                                252-MSE|                                                                                                                         
                           -1|                                                                                                               154-MSE                                                                                                257-MSE                                                                                                                     
                            52
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H75)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H75)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H75)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3H75)

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  Cis Peptide Bonds
    Gly A:323 - Pro A:324   [ RasMol ]  
 

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  3h75
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