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(-) Description

Title :  CRYSTAL STRUCTURE OF A CHEMOTACTIC CHEC-LIKE PROTEIN (SO_3915) FROM SHEWANELLA ONEIDENSIS MR-1 AT 1.86 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Apr 09  (Deposition) - 28 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Chec-Like Superfamily Protein (Np_719446. 1) From Shewanella Oneidensis At 1. 86 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHEC-LIKE SUPERFAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_719446.1, SO_3915
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric/Biological Unit (3, 20)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE18Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN B:7 , GLN B:11 , LYS B:107 , GOL B:156 , HOH B:203 , HOH B:221BINDING SITE FOR RESIDUE SO4 B 155
2AC2SOFTWAREASN B:4 , PHE B:5 , GLU B:62 , LYS B:107 , THR B:145 , SO4 B:155BINDING SITE FOR RESIDUE GOL B 156

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H2D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3H2D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H2D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H2D)

(-) Exons   (0, 0)

(no "Exon" information available for 3H2D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:153
 aligned with Q8EAI7_SHEON | Q8EAI7 from UniProtKB/TrEMBL  Length:154

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         Q8EAI7_SHEON     1 MNVNFINPFLQSLLNVISTMASLELTPGKPQIKTDNLAKGDVSGLIGMVGPQTKGSLSITFEQKLVLQIMQNMLGENPGKINEEVTDLVGEITNMVTGGAKNLLGQKGYEFEMATPMVVSGQGHTISHKANGTKIIMPFTSSYGTAFIEVCFE 153
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.ee...ee.......eeeeeeeeeee..eeeeeeeeehhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....ee...eeeeeeeeeeee.....eeeeeeee..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h2d A   1 mNVNFINPFLQSLLNVISTmASLELTPGKPQIKTDNLAKGDVSGLIGmVGPQTKGSLSITFEQKLVLQImQNmLGENPGKINEEVTDLVGEITNmVTGGAKNLLGQKGYEFEmATPmVVSGQGHTISHKANGTKIImPFTSSYGTAFIEVCFE 153
                            |       10        20        30        40       |50        60        70  |     80        90    |  100       110  |   |120       130      |140       150   
                            |                 20-MSE                      48-MSE                70-MSE                   95-MSE           113-MSE                 137-MSE            
                            1-MSE                                                                  73-MSE                                     117-MSE                                


Chain B from PDB  Type:PROTEIN  Length:154
 aligned with Q8EAI7_SHEON | Q8EAI7 from UniProtKB/TrEMBL  Length:154

    Alignment length:154
                             1                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149    
         Q8EAI7_SHEON     - -MNVNFINPFLQSLLNVISTMASLELTPGKPQIKTDNLAKGDVSGLIGMVGPQTKGSLSITFEQKLVLQIMQNMLGENPGKINEEVTDLVGEITNMVTGGAKNLLGQKGYEFEMATPMVVSGQGHTISHKANGTKIIMPFTSSYGTAFIEVCFE 153
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh......ee...ee.......eeeeeeeeeee..eeeeeeeeehhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....ee...eeeeeeeeeeee.....eeeeeeee..eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h2d B   0 GmNVNFINPFLQSLLNVISTmASLELTPGKPQIKTDNLAKGDVSGLIGmVGPQTKGSLSITFEQKLVLQImQNmLGENPGKINEEVTDLVGEITNmVTGGAKNLLGQKGYEFEmATPmVVSGQGHTISHKANGTKIImPFTSSYGTAFIEVCFE 153
                             |       9        19|       29        39        49        59        69|  |    79        89     |  99       109   |   119       129       139       149    
                             1-MSE             20-MSE                      48-MSE                70-MSE                   95-MSE           113-MSE                 137-MSE            
                                                                                                    73-MSE                                     117-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H2D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H2D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H2D)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8EAI7_SHEON | Q8EAI7)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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