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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SAM-DEPENDENT METHYLTRANSFERASE CG3271 FROM CORYNEBACTERIUM GLUTAMICUM IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE AND PYROPHOSPHATE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CGR113A
 
Authors :  F. Forouhar, S. Lew, J. Seetharaman, S. Sahdev, R. Xiao, E. L. Foote, C. Ciccosanti, D. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  14 Apr 09  (Deposition) - 28 Apr 09  (Release) - 28 Apr 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Methyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, S. Lew, J. Seetharaman, S. Sahdev, R. Xiao, E. L. Foote, C. Ciccosanti, D. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Northeast Structural Genomics Consortium Target Cgr113A
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SAM-DEPENDENT METHYLTRANSFERASE
    Atcc: 13032
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21-23C
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 58-252
    Gene: CG3271
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM ATCC 13032
    Organism Taxid: 196627
    Strain: DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
2PPV1Ligand/IonPYROPHOSPHATE
3SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:3 , HOH A:8 , HOH A:12 , HOH A:16 , TYR A:66 , LEU A:77 , GLY A:106 , GLY A:108 , ARG A:111 , GLU A:127 , PRO A:128 , THR A:149 , ILE A:150 , TRP A:166 , TYR A:167 , SER A:168 , MSE A:172 , HOH A:267 , HOH A:324BINDING SITE FOR RESIDUE SAH A 301
2AC2SOFTWAREARG A:137 , HIS A:146 , HIS A:147 , ARG B:137 , HIS B:146 , HIS B:147BINDING SITE FOR RESIDUE PPV A 302
3AC3SOFTWAREHOH B:1 , HOH B:4 , HOH B:6 , HOH B:57 , TYR B:66 , GLY B:106 , GLY B:108 , ARG B:111 , GLU B:127 , PRO B:128 , LEU B:132 , ILE B:150 , TRP B:166 , TYR B:167 , SER B:168 , MSE B:172 , HOH B:278BINDING SITE FOR RESIDUE SAH B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H2B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3H2B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H2B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H2B)

(-) Exons   (0, 0)

(no "Exon" information available for 3H2B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...hhhhhh.........hhhhhhhhhhhh...eeee....hhhhhhhhhh...eeee..hhhhhhhhhhhh...eee..hhhhhhhh...eeeeeee.........hhhhhhhhhhhheeeeeeeeeeee.....eee......eee.hhhhhhhhhhhh.eeeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h2b A  59 TDDVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHmGPGELPDALVALRmAVEDGGGLLmSFFSGPSLEPmYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEASL 253
                                    68        78        88        98       108       118       128       138       148       158       168   |   178       188       198       208       218       228       238       248     
                                                                                                                                           172-MSE       186-MSE   196-MSE    207-MSE                                          


Chain B from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh....hhhhhh.........hhhhhhhhhhh....eeee....hhhhhhhhhh...eeeee.hhhhhhhhhhhh....eee..hhhhhhh...eeeeeee.........hhhhhhhhhhh.eeeeeeeeeeee.....eee......eee.hhhhhhhhhhhhheeeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h2b B  58 ATDDVSKAYSSPTFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHmGPGELPDALVALRmAVEDGGGLLmSFFSGPSLEPmYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEASL 253
                                    67        77        87        97       107       117       127       137       147       157       167    |  177       187       197       207       217       227       237       247      
                                                                                                                                            172-MSE       186-MSE   196-MSE    207-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H2B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H2B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H2B)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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