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(-) Description

Title :  CRYSTAL STRUCTURE OF PROBABLE GLUTATHIONE S-TRANSFERASE FROM BORDETELLA BRONCHISEPTICA RB50
 
Authors :  K. Tan, X. Xu, H. Cui, A. Savchenko, A. M. Edwards, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  13 Apr 09  (Deposition) - 19 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc84167, Glutathione S-Transferase, Bordetella Bronchiseptica Rb50, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, X. Xu, H. Cui, A. Savchenko, A. M. Edwards, A. Joachimiak
The Crystal Structure Of Probable Glutathione S-Transferase From Bordetella Bronchiseptica Rb50
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE GLUTATHIONE S-TRANSFERASE
    Atcc: BAA-588
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BB0443
    Organism Scientific: BORDETELLA BRONCHISEPTICA RB50
    Organism Taxid: 257310
    Strain: RB50 / NCTC 13252

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 26)

Asymmetric/Biological Unit (3, 26)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , ILE A:223 , PHE A:224BINDING SITE FOR RESIDUE CL A 234
2AC2SOFTWAREASP A:121 , GLN A:122 , ASP A:124 , VAL A:125 , ARG B:128BINDING SITE FOR RESIDUE CL A 235
3AC3SOFTWAREGLY A:209 , TYR A:210 , ARG A:215BINDING SITE FOR RESIDUE EDO A 236
4AC4SOFTWAREGLY B:13 , ILE B:223 , PHE B:224BINDING SITE FOR RESIDUE CL B 234
5AC5SOFTWAREARG A:128 , ASP B:121 , GLN B:122 , GLN B:123 , ASP B:124 , VAL B:125 , HOH B:362BINDING SITE FOR RESIDUE CL B 235
6AC6SOFTWAREHIS B:189 , ARG B:190BINDING SITE FOR RESIDUE CL B 236
7AC7SOFTWAREARG B:47 , ARG B:48 , ASP B:49 , THR B:50 , THR B:64BINDING SITE FOR RESIDUE CL B 237

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H1N)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:55 -Pro A:56
2Pro B:55 -Pro B:56

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H1N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H1N)

(-) Exons   (0, 0)

(no "Exon" information available for 3H1N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:240
 aligned with A0A0H3LPN1_B | A0A0H3LPN1 from UniProtKB/TrEMBL  Length:233

    Alignment length:240
                                   1                                                                                                                                                                                                                                        
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233
         A0A0H3LPN1_B     - -------MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAFPRRMRTLVHRYPRLMALHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA 233
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3h1nA01 A:-6-83,A:204-233 Glutaredoxin                                                    3h1nA02 A:84-203  [code=1.20.1050.10, no name defined]                                                                  3h1nA01 A:-6-83,A:204-233      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhheeee.......hhhhhhhhhhhhh..eee.hhh...hhhhhhh...........eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3h1n A  -6 ENLYFQGmAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDmLDDmRRRRDTPPFAPPYLVADGmTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRmPKFmQYFEQALDRPGGWLTDmGRWSYADLSLYHVVEGLLHAFPRRmRTLVHRYPRLmALHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA 233
                                   | 3        13        23        33      | 43|       53        63        73        83        93       103       113       123       133    |  143       153     | 163       173       183|      193 |     203       213       223       233
                                   1-MSE                                 40-MSE                 63-MSE                                                                    138-MSE              159-MSE                  184-MSE    195-MSE                                  
                                                                             44-MSE                                                                                           142-MSE                                                                                       


Chain B from PDB  Type:PROTEIN  Length:242
 aligned with A0A0H3LPN1_B | A0A0H3LPN1 from UniProtKB/TrEMBL  Length:233

    Alignment length:242
                                     1                                                                                                                                                                                                                                        
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
         A0A0H3LPN1_B     - ---------MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADLSLYHVVEGLLHAFPRRMRTLVHRYPRLMALHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA 233
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h1nB01 B:-8-83,B:204-233 Glutaredoxin                                                      3h1nB02 B:84-203  [code=1.20.1050.10, no name defined]                                                                  3h1nB01 B:-8-83,B:204-233      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee.......hhhhhhhhhhhh...eee.hhh...hhhhhhhhh.........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..............hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h1n B  -8 GRENLYFQGmAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDmLDDmRRRRDTPPFAPPYLVADGmTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRmPKFmQYFEQALDRPGGWLTDmGRWSYADLSLYHVVEGLLHAFPRRmRTLVHRYPRLmALHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA 233
                                     1        11        21        31        41  |     51        61 |      71        81        91       101       111       121       131      |141|      151       161       171       181  |    191   |   201       211       221       231  
                                     1-MSE                                 40-MSE                 63-MSE                                                                    138-MSE              159-MSE                  184-MSE    195-MSE                                  
                                                                               44-MSE                                                                                           142-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H1N)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H1N)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3H1N)

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