3H0N - JenaLib

Title :   CRYSTAL STRUCTURE OF A DUF1470 FAMILY PROTEIN (JANN_2411) FROM JANNASCHIA SP. CCS1 AT 1.45 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   09 Apr 09 (Deposition) - 21 Apr 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Treble Clef Zinc Finger, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Bakolitsa, A. Bateman, K. K. Jin, D. Mcmullan, S. S. Krishna, M. D. Miller, P. Abdubek, C. Acosta, T. Astakhova, H. L. Axelrod, P. Burra, D. Carlton, H. J. Chiu, T. Clayton, D. Das, M. C. Deller, L. Duan, Y. Elias, J. Feuerhelm, J. C. Grant, A. Grzechnik, S. K. Grzechnik, G. W. Han, L. Jaroszewski, H. E. Klock, M. W. Knuth, P. Kozbial, A. Kumar, D. Marciano, A. T. Morse, K. D. Murphy, E. Nigoghossian, L. Okach, S. Oommachen, J. Paulsen, R. Reyes, C. L. Rife, N. Sefcovic, H. Tien, C. B. Trame, C. V. Trout, H. Van Den Bedem, D. Weekes, A. White, Q. Xu, K. O. Hodgson, J. Wooley, M. A. Elsliger, A. M. Deacon, A. Godzik, S. Lesley, I. A. Wilson
The Structure Of Jann_2411 (Duf1470) From Jannaschia Sp. At 1. 45 Resolution Reveals A New Fold (The Abate Domain And Suggests Its Possible Role As A Transcription Regulator
Acta Crystallogr. , Sect. F V. 66 1198 2010
PubMed-ID: 20944211 | Reference-DOI: 10.1107/S1744309109025196

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 11)

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:147 , CYS A:152 , CYS A:168 , CYS A:172	BINDING SITE FOR RESIDUE ZN A 201
2	AC2	SOFTWARE	HIS A:112 , HIS A:114 , ACT A:207 , HOH A:315 , HOH A:448	BINDING SITE FOR RESIDUE NI A 202
3	AC3	SOFTWARE	CYS A:147 , ASN A:148 , ALA A:149 , CYS A:152 , HOH A:210 , HOH A:232 , HOH A:449	BINDING SITE FOR RESIDUE NA A 203
4	AC4	SOFTWARE	LEU A:92 , ARG A:93 , HIS A:95 , HOH A:248 , HOH A:251 , HOH A:274	BINDING SITE FOR RESIDUE NA A 204
5	AC5	SOFTWARE	GLU A:7 , ARG A:110 , GLN A:139 , HOH A:268 , HOH A:445	BINDING SITE FOR RESIDUE GOL A 205
6	AC6	SOFTWARE	ASN A:19 , ARG A:26 , ARG A:27 , CYS A:168	BINDING SITE FOR RESIDUE GOL A 206
7	AC7	SOFTWARE	TYR A:6 , LEU A:111 , HIS A:112 , HIS A:113 , HIS A:114 , ILE A:127 , NI A:202 , HOH A:255	BINDING SITE FOR RESIDUE ACT A 207
8	AC8	SOFTWARE	VAL A:141 , ARG A:151 , HOH A:230 , HOH A:297 , HOH A:415 , HOH A:425	BINDING SITE FOR RESIDUE ACT A 208
9	AC9	SOFTWARE	PRO A:96 , ALA A:97 , THR A:98 , HOH A:251 , HOH A:274	BINDING SITE FOR RESIDUE ACT A 209

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:184
 aligned with Q28PN4_JANSC | Q28PN4 from UniProtKB/TrEMBL  Length:187

    Alignment length:184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    
         Q28PN4_JANSC     1 MNLDSYERTGLRVSLDLVNIATPGSRRGTPHTGGCVIEDLHDLLKDDPASVAQLGDDHVEGFVELARLLHTAIDALSNGQVATAATALNHLLRKHPATPELAQDPDGTWRLHHHPLDAELVPMWTAICAEGLAREIGHQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNRVKAAAFRER 184
               SCOP domains d3h0na_ A: Uncharacterized protein Jann2411                                                                                                                                              SCOP domains
               CATH domains -3h0nA00 A:2-184 Jann2411-like domain                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.eee..eee....hhhhhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....eeee.....eeee......hhhhhhhhhhhhhhhhhhhh.hhh.eee........eee...........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h0n A   1 mNLDSYERTGLRVSLDLVNIATPGSRRGTPHTGGCVIEDLHDLLKDDPASVAQLGDDHVEGFVELARLLHTAIDALSNGQVATAATALNHLLRKHPATPELAQDPDGTWRLHHHPLDAELVPmWTAICAEGLAREIGHQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNRVKAAAFRER 184
                            |       10        20        30        40        50        60        70        80        90       100       110       120  |    130       140       150       160       170       180    
                            |                                                                                                                       123-MSE                                                         
                            1-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Visualization

Interactive Views

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NI	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3h0n)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Still Images

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	3h0n
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q28PN4_JANSC \| Q28PN4
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Analysis Tools

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q28PN4_JANSC \| Q28PN4
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description