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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ADENYLATED KINASE RELATED PROTEIN FROM SULFOLOBUS SOLFATARICUS TO 3.25A
 
Authors :  A. J. Stein, A. Sather, J. Abdullah, A. Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
Date :  09 Apr 09  (Deposition) - 21 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Adenylate, Kinase, Sulfolobus, Solfataricus, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Atp-Binding, Nucleotide-Binding, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Stein, A. Sather, J. Abdullah, A. Joachimiak
Crystal Structure Of An Adenylated Kinase Related Protein From Sulfolobus Solfataricus To 3. 25A
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UPF0200 PROTEIN SSO1041
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SSO1041
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Strain: P2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:17 , GLY A:18 , SER A:19 , GLY A:20 , LYS A:21 , SER A:22BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWAREPRO B:17 , GLY B:18 , SER B:19 , GLY B:20 , LYS B:21 , SER B:22BINDING SITE FOR RESIDUE SO4 B 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H0K)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:69 -Gly A:70
2Asp B:91 -Gly B:92

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H0K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H0K)

(-) Exons   (0, 0)

(no "Exon" information available for 3H0K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
 aligned with Y1041_SULSO | Q97Z90 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:177
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       
          Y1041_SULSO     9 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 185
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h0kA00 A:9-185 P-loop containing nucleoti  de triphosphate hydrolases                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhh..eeeehhhhhhhhhh...--..hhhhhhhhhhhhh..hhhhhhhhhhh.......eeee...hhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhh..----..hhhhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h0k A   9 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEA--GERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERL----SKEISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 185
                                    18        28        38        48 |  |   58        68        78        88        98       108       118       128 |    |138       148       158       168       178       
                                                                    50 53                                                                          130  135                                                  


Chain B from PDB  Type:PROTEIN  Length:169
 aligned with Y1041_SULSO | Q97Z90 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:177
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       
          Y1041_SULSO     9 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 185
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h0kB00 B:9-185 P-loop containing nucleotide triphosphate hydrolases                                                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhh.eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhh.......eeee...hhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhh--------hhhhhhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h0k B   9 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIE--------EISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 185
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       
                                                                                                                                                 128      137
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H0K)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H0K)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Y1041_SULSO | Q97Z90)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

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UniProtKB/Swiss-Prot
        Y1041_SULSO | Q97Z90: 3lw7

(-) Related Entries Specified in the PDB File

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