3GX5 - JenaLib

Title :   CRYSTAL STRUCTURE OF T. TENCONGENSIS SAM-I RIBOSWITCH VARIANT A94G/U34 BOUND WITH SAM

Authors :   R. K. Montange, R. T. Batey

Date :   01 Apr 09 (Deposition) - 12 Jan 10 (Release) - 02 Mar 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A

Keywords :   Kink-Turn, Pseudoknot, Four-Way Junction, Riboswitch, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. K. Montange, E. Mondragon, D. Van Tyne, A. D. Garst, P. Ceres, R. T. Batey
Discrimination Between Closely Related Cellular Metabolites By The Sam-I Riboswitch.
J. Mol. Biol. V. 396 761 2010
PubMed-ID: 20006621 | Reference-DOI: 10.1016/J.JMB.2009.12.007

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	U A:7 , G A:11 , A A:45 , A A:46 , C A:47 , U A:57 , G A:58 , C A:59 , U A:88 , G A:89	BINDING SITE FOR RESIDUE SAM A 301
2	AC2	SOFTWARE	A A:62 , C A:65	BINDING SITE FOR RESIDUE MG A 204
3	AC3	SOFTWARE	A A:9 , A A:10 , U A:64 , HOH A:401 , HOH A:402 , HOH A:403 , HOH A:404	BINDING SITE FOR RESIDUE MG A 400
4	AC4	SOFTWARE	U A:64 , U A:67 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:504	BINDING SITE FOR RESIDUE MG A 500
5	AC5	SOFTWARE	HOH A:601 , HOH A:602 , HOH A:603 , HOH A:604	BINDING SITE FOR RESIDUE MG A 600
6	AC6	SOFTWARE	A A:70 , G A:71 , G A:79 , U A:80	BINDING SITE FOR RESIDUE MG A 207
7	AC7	SOFTWARE	HOH A:701 , HOH A:702 , HOH A:703 , HOH A:704 , HOH A:705 , HOH A:706	BINDING SITE FOR RESIDUE MG A 700
8	AC8	SOFTWARE	G A:27 , G A:28	BINDING SITE FOR RESIDUE MG A 208
9	AC9	SOFTWARE	HOH A:801 , HOH A:802 , HOH A:803 , HOH A:804 , HOH A:805 , HOH A:806	BINDING SITE FOR RESIDUE MG A 800

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:94
                                                                                                                             
                  3gx5 A  1 GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG 94
                                    10        20        30        40        50        60        70        80        90

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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