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(-) Description

Title :  TTESAM-I RIBOSWITCH VARIANT A94GU34C BOUND TO SINEFUNGIN
 
Authors :  R. K. Montange, R. T. Batey
Date :  01 Apr 09  (Deposition) - 12 Jan 10  (Release) - 02 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Kink-Turn, Pseudoknot, Four-Way Junction, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. K. Montange, E. Mondragon, D. Van Tyne, A. D. Garst, P. Ceres, R. T. Batey
Discrimination Between Closely Related Cellular Metabolites By The Sam-I Riboswitch.
J. Mol. Biol. V. 396 761 2010
PubMed-ID: 20006621  |  Reference-DOI: 10.1016/J.JMB.2009.12.007

(-) Compounds

Molecule 1 - RNA (94-MER)
    Chains: A
    Engineered: YES
    Mutation: YES
    Other Details: THIS SEQUENCE IS BASED ON A SEQUENCE FOUND IN T. TENGCONGENSIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1MG7Ligand/IonMAGNESIUM ION
2SFG1Ligand/IonADENOSYL-ORNITHINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREU A:7 , G A:11 , A A:45 , A A:46 , C A:47 , U A:57 , G A:58 , C A:59 , U A:88 , G A:89BINDING SITE FOR RESIDUE SFG A 301
2AC2SOFTWAREG A:55 , G A:56BINDING SITE FOR RESIDUE MG A 201
3AC3SOFTWAREG A:50 , A A:52 , A A:53 , U A:54BINDING SITE FOR RESIDUE MG A 202
4AC4SOFTWAREU A:64 , U A:67BINDING SITE FOR RESIDUE MG A 203
5AC5SOFTWAREG A:32BINDING SITE FOR RESIDUE MG A 205
6AC6SOFTWAREG A:27BINDING SITE FOR RESIDUE MG A 206
7AC7SOFTWAREA A:10 , A A:62 , U A:64BINDING SITE FOR RESIDUE MG A 207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GX2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GX2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GX2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GX2)

(-) Exons   (0, 0)

(no "Exon" information available for 3GX2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:94
                                                                                                                             
                  3gx2 A  1 GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG 94
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GX2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GX2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GX2)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3gx3 3gx5 3gx6 3gx7