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Title :   CRYSTAL STRUCTURE OF ASFV PB119L, A VIRAL SULFHYDRYL OXIDASE

Authors :   M. Hakim, D. Fass

Date :   01 Apr 09 (Deposition) - 07 Jul 09 (Release) - 07 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Homodimer, Five-Helix Bundle, Disulfide Bond, Fad, Flavoprotein, Late Protein, Oxidoreductase, Virulence (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Hakim, D. Fass
Dimer Interface Migration In A Viral Sulfhydryl Oxidase
J. Mol. Biol. V. 391 758 2009
PubMed-ID: 19576902 | Reference-DOI: 10.1016/J.JMB.2009.06.070

Molecule 1 - FAD-LINKED SULFHYDRYL OXIDASE
	Chains	:	A, B
	EC Number	:	1.8.3.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21 (DE3) PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 1-103
	Gene	:	9GL, B119L, BA71V-073
	Organism Common	:	ASFV
	Organism Scientific	:	AFRICAN SWINE FEVER VIRUS BA71V
	Organism Taxid	:	10498
	Strain	:	BADAJOZ 1971 VERO-ADAPTED, BA71V
	Synonym	:	P14

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:34 , HOH A:53 , HOH A:54 , HOH A:55 , HOH A:58 , MET A:101 , LEU A:102 , GLY A:105 , PRO A:106 , TYR A:108 , TRP A:109 , HIS A:113 , LEU A:142 , ARG A:146 , CYS A:147 , PHE A:173 , PHE A:175 , HIS A:176 , ASN A:177 , VAL A:179 , ASN A:180 , ARG A:182 , LYS A:185 , ILE A:188 , TYR A:193 , ILE A:196 , HOH A:222 , HOH A:241 , HOH B:7	BINDING SITE FOR RESIDUE FAD A 334
2	AC2	SOFTWARE	TRP A:190 , HOH B:13 , HOH B:19 , HOH B:21 , HOH B:24 , HOH B:92 , MET B:101 , GLY B:105 , PRO B:106 , TYR B:108 , TRP B:109 , HIS B:113 , LEU B:142 , ARG B:146 , CYS B:147 , HIS B:150 , PHE B:173 , PHE B:175 , HIS B:176 , ASN B:177 , VAL B:179 , ASN B:180 , ARG B:182 , LEU B:183 , LYS B:185 , ILE B:188 , TYR B:193 , HOH B:217 , HOH B:224	BINDING SITE FOR RESIDUE FAD B 335

Asymmetric/Biological Unit

No.	Residues
1	A:144	-	A:147
2	B:144	-	B:147

(no "Cis Peptide Bond" information available for 3GWL)

(no "SAP(SNP)/Variant" information available for 3GWL)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ERV_ALR	PS51324	ERV/ALR sulfhydryl oxidase domain profile.	FLSO_ASFB7	1-97	2	A:101-197 B:101-197

(no "Exon" information available for 3GWL)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:106
 aligned with FLSO_ASFB7 | Q65163 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:106
                               1                                                                                                      
                               |     7        17        27        37        47        57        67        77        87        97      
           FLSO_ASFB7     - ---MLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQSILK 103
               SCOP domains d3gwla_ A: automated matches                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---ERV_ALR  PDB: A:101-197 UniProt: 1-97                                                            ------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 3gwl A  98 GSHMLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQSILK 203
                                   107       117       127       137       147       157       167       177       187       197

Chain B from PDB  Type:PROTEIN  Length:102
 aligned with FLSO_ASFB7 | Q65163 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:102
                             1                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99  
           FLSO_ASFB7     - -MLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQSI 101
               SCOP domains d3gwlb_ B: automated matches                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -ERV_ALR  PDB: B:101-197 UniProt: 1-97                                                            ---- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3gwl B 100 HMLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQSI 201
                                   109       119       129       139       149       159       169       179       189       199

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Four-helical up-and-down bundle (308)

Superfamily: FAD-dependent thiol oxidase (15)

Family: automated matches (5)

Protein domain: automated matches (5)

African swine fever virus ba71v [TaxId: 10498] (1)

1a	d3gwla_	A:
1b	d3gwlb_	B:

(no "CATH Domain" information available for 3GWL)

(no "Pfam Domain" information available for 3GWL)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (FLSO_ASFB7 | Q65163)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016972	thiol oxidase activity	Catalysis of the reaction: 4 R'C(R)SH + O2 = 2 R'C(R)S-S(R)CR' + 2 H2O.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.

Asymmetric/Biological Unit
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1jr8	ERV2P, A YEAST HOMOLOG
1oqc	ALR, A MAMMALIAN HOMOLOG
2hj3	ATERV1, A PLANT HOMOLOG
3gwn

Description

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

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