3GT5 - JenaLib

Title :   CRYSTAL STRUCTURE OF AN N-ACETYLGLUCOSAMINE 2-EPIMERASE FAMILY PROTEIN FROM XYLELLA FASTIDIOSA

Authors :   J. B. Bonanno, M. Rutter, K. T. Bain, M. Iizuka, R. Romero, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)

Date :   27 Mar 09 (Deposition) - 14 Apr 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics, Isomerase, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. B. Bonanno, M. Rutter, K. T. Bain, M. Iizuka, R. Romero, S. Wasserman J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of An N-Acetylglucosamine 2-Epimerase Family Protein From Xylella Fastidiosa
To Be Published
PubMed: search

Compounds

Molecule 1 - N-ACETYLGLUCOSAMINE 2-EPIMERASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	MODIFIED PET26
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector	:	PET
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 11-401
	Gene	:	XFASM23_1239
	Organism Scientific	:	XYLELLA FASTIDIOSA
	Organism Taxid	:	405441
	Strain	:	M23

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:391
 aligned with B2I5L9_XYLF2 | B2I5L9 from UniProtKB/TrEMBL  Length:401

    Alignment length:391
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398 
         B2I5L9_XYLF2     9 VPDFRSADFLRTHISDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWNFTRYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLLILDRYIEVEWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTICDDDKYFWVQAESLAAAALLATRSGDERYWQWYDRLWAYAWQHMVDHRYGAWYRLLDGDNRKYNDEKSPAGKTDYHTMGACHEVLNVVWT 399
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh............ee.....eee..eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eee..eeee..eehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..........ee.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee........................hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.........ee.....eee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee.................hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gt5 A   9 SLDFRSADFLRTHISDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWNFTRYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQPGHQTEWAKLLLILDRYIEVEWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTICDDDKYFWVQAESLAAAALLATRSGDERYWQWYDRLWAYAWQHMVDHRYGAWYRLLDGDNRKYNDEKSPAGKTDYHTMGACHEVLNVVWT 399
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Asymmetric/Biological Unit(show GO term definitions)

Chain A (B2I5L9_XYLF2 | B2I5L9)

molecular function
	GO:0003824		catalytic activity

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Description