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(-) Description

Title :  A BULKY RHODIUM COMPLEX BOUND TO AN ADENOSINE-ADENOSINE DNA MISMATCH
 
Authors :  B. M. Zeglis, V. C. Pierre, J. T. Kaiser, J. K. Barton
Date :  27 Mar 09  (Deposition) - 19 May 09  (Release) - 02 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Dna Mismatch, Metallointercalator, Dna Recognition (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. M. Zeglis, V. C. Pierre, J. T. Kaiser, J. K. Barton
A Bulky Rhodium Complex Bound To An Adenosine-Adenosine Dna Mismatch: General Architecture Of The Metalloinsertion Binding Mode
Biochemistry V. 48 4247 2009
PubMed-ID: 19374348  |  Reference-DOI: 10.1021/BI900194E
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3'
    Chains: A
    Engineered: YES
    Other Details: SYNTHETIC DNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2NA1Ligand/IonSODIUM ION
3R1C2Ligand/IonBIS(2,2'-BIPYRIDINE-KAPPA~2~N~1~,N~1'~)[CHRYSENE-5,6-DIIMINATO(2-)-KAPPA~2~N,N']RHODIUM(4+)
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION
3R1C4Ligand/IonBIS(2,2'-BIPYRIDINE-KAPPA~2~N~1~,N~1'~)[CHRYSENE-5,6-DIIMINATO(2-)-KAPPA~2~N,N']RHODIUM(4+)

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:54 , R1C A:2001BINDING SITE FOR RESIDUE NA A 1002
2AC2SOFTWAREDA A:4 , DG A:12BINDING SITE FOR RESIDUE CL A 1003
3AC3SOFTWAREDG A:3 , DA A:4 , DA A:5 , DT A:8 , DA A:9 , DC A:10 , DC A:11 , HOH A:35 , HOH A:58 , NA A:1002BINDING SITE FOR RESIDUE R1C A 2001
4AC4SOFTWAREDC A:1 , DA A:5 , DA A:6 , DT A:7 , DG A:12 , HOH A:34BINDING SITE FOR RESIDUE R1C A 2002

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

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Chain A from PDB  Type:DNA  Length:12
                                           
                  3gsj A  1 CGGAAATTACCG 12
                                    10
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2o1i 3gsk