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(-) Description

Title :  2.1 ANGSTROM CRYSTAL STRUCTURE OF 3-KETOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE FROM BARTONELLA HENSELAE
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  26 Mar 09  (Deposition) - 07 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Acyl Carrier Protein, Oxidoreductase, Seattle Structural Genomics Center For Infectious Disease, Ssgcid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. L. Staker
2. 1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-OXOACYL-(ACYL CARRIERPROTEIN) REDUCTASE
    Atcc: 49882
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FABG, BH05350
    Organism Scientific: BARTONELLA HENSELAE
    Organism Taxid: 283166
    Strain: HOUSTON-1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3GRP)

(-) Sites  (0, 0)

(no "Site" information available for 3GRP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GRP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GRP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GRP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GRP)

(-) Exons   (0, 0)

(no "Exon" information available for 3GRP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with A0A0H3LWT6_B | A0A0H3LWT6 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                             1                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239   
         A0A0H3LWT6_B     - -MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGM 242
               SCOP domains d3grpa_ A: automated matches                                                                                                                                                                                                                        SCOP domains
               CATH domains 3grpA00 A:0-242 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.....-----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...-------hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3grp A   0 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGIT-----VRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSI-------GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGM 242
                                     9        19        29        39        49        59        69        79        89 |     |99       109       119       129       139|      149       159       169       179       189       199       209       219       229       239   
                                                                                                                      91    97                                        140     148                                                                                              


Chain B from PDB  Type:PROTEIN  Length:219
 aligned with A0A0H3LWT6_B | A0A0H3LWT6 from UniProtKB/TrEMBL  Length:245

    Alignment length:245
                             1                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239     
         A0A0H3LWT6_B     - -MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGMAM 244
               SCOP domains d3grpb_ B: automated matches                                                                                                                                                                                                                          SCOP domains
               CATH domains 3grpB00 B:0-244 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh....eeee...-------......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...-------hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.....------------.hhhhh......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3grp B   0 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAG-------VRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSI-------GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKS------------AIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGMAM 244
                                     9        19        29        39        49        59        69        79        89       |99       109       119       129       139|      149       159       169       179       | -         -|      209       219       229       239     
                                                                                                                    89      97                                        140     148                                    187          200                                            


Chain C from PDB  Type:PROTEIN  Length:213
 aligned with A0A0H3LWT6_B | A0A0H3LWT6 from UniProtKB/TrEMBL  Length:245

    Alignment length:244
                             1                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239    
         A0A0H3LWT6_B     - -MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGMA 243
               SCOP domains d3grpc_ C: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains 3grpC00 C:0-243 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh....eeee.------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee...--------hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....-----------...hhhhh......hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3grp C   0 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNN------------QDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSI--------QTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIK-----------KEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGMA 243
                                     9        19        29        39        49        59        69        79       | -         -|      109       119       129       139|      149       159       169       179      |  -       199       209       219       229       239    
                                                                                                                  87          100                                     140      149                                  186         198                                             


Chain D from PDB  Type:PROTEIN  Length:209
 aligned with A0A0H3LWT6_B | A0A0H3LWT6 from UniProtKB/TrEMBL  Length:245

    Alignment length:244
                             1                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239    
         A0A0H3LWT6_B     - -MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGMA 243
               SCOP domains d3grpd_ D: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains 3grpD00 D:0-243 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee....----------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...--------hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....-----------------........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3grp D   0 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGI----------DQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSI--------QTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIK-----------------MIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGMA 243
                                     9        19        29        39        49        59        69        79        89|        - |     109       119       129       139|      149       159       169       179      |  -         -    |  209       219       229       239    
                                                                                                                     90        101                                    140      149                                  186               204
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GRP)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3GRP)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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