Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF CT0912, ORFAN PROTEIN FROM CHLOROBIUM TEPIDUM WITH A FERREDOXIN-LIKE DOMAIN REPEAT (NP_661805.1) FROM CHLOROBIUM TEPIDUM TLS AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Mar 09  (Deposition) - 31 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,B  (1x)
Biol. Unit 6:  C,D  (1x)
Keywords :  Np_661805. 1, Ct0912, Orfan Protein From Chlorobium Tepidum With A Ferredoxin-Like Domain Repeat, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Ct0912, Orfan Protein From Chlorobium Tepidum With A Ferredoxin-Like Domain Repeat (Np_661805. 1) From Chlorobium Tepidum Tls At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CT0912, ORFAN PROTEIN WITH A FERREDOXIN-LIKE DOMAIN REPEAT
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CT0912, NP_661805.1
    Organism Scientific: CHLOROBIUM TEPIDUM TLS
    Organism Taxid: 194439

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): AB  
Biological Unit 6 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 42)

Asymmetric Unit (5, 42)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2GOL11Ligand/IonGLYCEROL
3MG5Ligand/IonMAGNESIUM ION
4MSE24Mod. Amino AcidSELENOMETHIONINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
12PE-1Ligand/IonNONAETHYLENE GLYCOL
2GOL2Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MSE6Mod. Amino AcidSELENOMETHIONINE
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
12PE-1Ligand/IonNONAETHYLENE GLYCOL
2GOL2Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MSE6Mod. Amino AcidSELENOMETHIONINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (2, 11)
No.NameCountTypeFull Name
12PE-1Ligand/IonNONAETHYLENE GLYCOL
2GOL5Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MSE6Mod. Amino AcidSELENOMETHIONINE
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (3, 9)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2GOL2Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MSE6Mod. Amino AcidSELENOMETHIONINE
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 5 (3, 17)
No.NameCountTypeFull Name
12PE-1Ligand/IonNONAETHYLENE GLYCOL
2GOL4Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MSE12Mod. Amino AcidSELENOMETHIONINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 6 (3, 20)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2GOL7Ligand/IonGLYCEROL
3MG-1Ligand/IonMAGNESIUM ION
4MSE12Mod. Amino AcidSELENOMETHIONINE
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:282 , HIS A:286 , GLU A:308 , HOH A:330 , HOH A:417BINDING SITE FOR RESIDUE MG A 321
02AC2SOFTWAREASP A:320 , HOH A:337 , HOH A:341 , HOH A:342 , HOH A:528 , HOH A:575BINDING SITE FOR RESIDUE MG A 322
03AC3SOFTWAREASN A:202 , MSE A:272 , HIS A:286 , PHE A:291 , ALA A:295 , VAL A:298 , PRO A:306 , HOH A:330 , HOH A:642BINDING SITE FOR RESIDUE GOL A 323
04AC4SOFTWAREGLU A:44 , MSE A:45 , ARG A:46 , LEU A:158 , HOH A:441 , ALA B:302 , VAL B:303BINDING SITE FOR RESIDUE GOL A 324
05AC5SOFTWAREHIS B:282 , HIS B:286 , GLU B:308 , HOH B:337 , HOH B:399BINDING SITE FOR RESIDUE MG B 321
06AC6SOFTWAREALA A:302 , GLU B:44 , MSE B:45 , ARG B:46 , LEU B:158 , HOH B:750BINDING SITE FOR RESIDUE GOL B 322
07AC7SOFTWAREASN B:202 , VAL B:204 , ALA B:295 , VAL B:298 , GLY B:299 , PRO B:306 , HOH B:337 , HOH B:699BINDING SITE FOR RESIDUE GOL B 323
08AC8SOFTWAREVAL A:303 , VAL A:304 , GLU B:44 , TYR B:160 , HIS B:203 , VAL B:204 , TYR B:270 , HOH B:584 , HOH B:749BINDING SITE FOR RESIDUE PEG B 324
09AC9SOFTWAREHIS C:282 , HIS C:286 , GLU C:308 , HOH C:339 , HOH C:372BINDING SITE FOR RESIDUE MG C 321
10BC1SOFTWARELEU C:103 , LEU C:312 , ARG C:314 , HOH C:553 , HOH C:911BINDING SITE FOR RESIDUE GOL C 322
11BC2SOFTWAREVAL C:87 , ASN C:202 , VAL C:204 , MSE C:272 , HIS C:286 , PHE C:291 , HOH C:664BINDING SITE FOR RESIDUE GOL C 323
12BC3SOFTWAREGLU C:44 , MSE C:45 , ARG C:46 , LEU C:158 , VAL D:303 , 2PE D:324BINDING SITE FOR RESIDUE GOL C 324
13BC4SOFTWAREPHE C:21 , PRO C:23 , ALA C:28BINDING SITE FOR RESIDUE GOL C 325
14BC5SOFTWAREVAL C:167 , GLU C:215 , PRO C:216 , ALA C:219BINDING SITE FOR RESIDUE GOL C 326
15BC6SOFTWAREHIS D:282 , HIS D:286 , GLU D:308 , HOH D:395 , HOH D:531BINDING SITE FOR RESIDUE MG D 321
16BC7SOFTWAREASN D:202 , VAL D:204 , MSE D:272 , HIS D:286 , ALA D:295 , VAL D:298 , GLY D:299 , PRO D:306 , HOH D:531 , HOH D:707BINDING SITE FOR RESIDUE GOL D 322
17BC8SOFTWAREALA C:302 , VAL C:303 , GLU D:44 , MSE D:45 , ARG D:46 , LEU D:158BINDING SITE FOR RESIDUE GOL D 323
18BC9SOFTWAREGLU C:44 , HIS C:203 , VAL C:204 , MSE C:205 , TYR C:270 , VAL C:307 , GOL C:324 , HOH C:628 , HOH C:881 , GLU D:44 , HIS D:203 , VAL D:204 , MSE D:205 , TYR D:270 , VAL D:303 , VAL D:304 , VAL D:307 , HOH D:346 , HOH D:497BINDING SITE FOR RESIDUE 2PE D 324

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GN6)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Glu A:230 -Pro A:231
2Gly A:305 -Pro A:306
3Glu B:230 -Pro B:231
4Gly B:305 -Pro B:306
5Glu C:230 -Pro C:231
6Gly C:305 -Pro C:306
7Glu D:230 -Pro D:231
8Gly D:305 -Pro D:306

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GN6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GN6)

(-) Exons   (0, 0)

(no "Exon" information available for 3GN6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
 aligned with Q8KDY2_CHLTE | Q8KDY2 from UniProtKB/TrEMBL  Length:320

    Alignment length:300
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
         Q8KDY2_CHLTE    21 FNPWTDAALDTIRDVNQALTLYAEMRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAMAPRGGDGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVMVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYIMHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhh.--....eeeeeeeeehhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee.hhhhh.hhhhh....hhhhhhhhh....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh....----.......eeeeeeeeeeee...ee.hhhhhhhhhhh...hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.........................eeeeeee......eeeeeeeeee.hhhhhhhhh.hhhhhhhhhhhhh...eeee.eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gn6 A  21 FNPWTDAALDTI--VNQALTLYAEmRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQmSGDSTmVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAmA----DGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVmVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYImHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
                                    30 |  |   40    |   50        60        70        80     |  90       100       110       120       130       140      || -  |    160       170       180       190       200    |  210       220       230       240       250       260       270 |     280       290       300       310       320
                                      32 35        45-MSE                             80-MSE |                                                          147-MSE53                                                 205-MSE                                                            272-MSE                                            
                                                                                            86-MSE                                                       148                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:296
 aligned with Q8KDY2_CHLTE | Q8KDY2 from UniProtKB/TrEMBL  Length:320

    Alignment length:300
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
         Q8KDY2_CHLTE    21 FNPWTDAALDTIRDVNQALTLYAEMRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAMAPRGGDGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVMVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYIMHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhh.......eeeeeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee.hhhhh.hhhhh....hhhhhhhhh....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh....----.......eeeeeeeeeeee...ee.hhhhhhhhhhh...hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.........................eeeeeee......eeeeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhh..eeee.eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gn6 B  21 FNPWTDAALDTIRDVNQALTLYAEmRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQmSGDSTmVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAmA----DGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVmVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYImHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
                                    30        40    |   50        60        70        80     |  90       100       110       120       130       140      || -  |    160       170       180       190       200    |  210       220       230       240       250       260       270 |     280       290       300       310       320
                                                   45-MSE                             80-MSE |                                                          147-MSE53                                                 205-MSE                                                            272-MSE                                            
                                                                                            86-MSE                                                       148                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:301
 aligned with Q8KDY2_CHLTE | Q8KDY2 from UniProtKB/TrEMBL  Length:320

    Alignment length:301
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 
         Q8KDY2_CHLTE    20 AFNPWTDAALDTIRDVNQALTLYAEMRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAMAPRGGDGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVMVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYIMHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh.......eeeeeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee.hhhhh.hhhhh....hhhhhhhhh....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.eee.hhh.eeee...eeeeeeeeeeee...ee.hhhhhhhhhhh...hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.........................eeeeeee......eeeeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhh..eeee.eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gn6 C  20 AFNPWTDAALDTIRDVNQALTLYAEmRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQmSGDSTmVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAmAPRGGDGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVmVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYImHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
                                    29        39     |  49        59        69        79|     | 89        99       109       119       129       139       149       159       169       179       189       199     | 209       219       229       239       249       259       269  |    279       289       299       309       319 
                                                    45-MSE                             80-MSE |                                                          147-MSE                                                   205-MSE                                                            272-MSE                                            
                                                                                             86-MSE                                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:296
 aligned with Q8KDY2_CHLTE | Q8KDY2 from UniProtKB/TrEMBL  Length:320

    Alignment length:300
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
         Q8KDY2_CHLTE    21 FNPWTDAALDTIRDVNQALTLYAEMRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAMAPRGGDGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVMVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYIMHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhh.......eeeeeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee.hhhhh.hhhhh....hhhhhhhhh....eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhh....----.......eeeeeeeeeeee...ee.hhhhhhhhhhh...hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.........................eeeeeee......eeeeeeeeee.hhhhhhhhh.hhhhhhhhhhhhh...eeee.eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gn6 D  21 FNPWTDAALDTIRDVNQALTLYAEmRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQmSGDSTmVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAmA----DGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVmVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYImHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD 320
                                    30        40    |   50        60        70        80     |  90       100       110       120       130       140      || -  |    160       170       180       190       200    |  210       220       230       240       250       260       270 |     280       290       300       310       320
                                                   45-MSE                             80-MSE |                                                          147-MSE53                                                 205-MSE                                                            272-MSE                                            
                                                                                            86-MSE                                                       148
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GN6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GN6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GN6)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8KDY2_CHLTE | Q8KDY2)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    2PE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:230 - Pro A:231   [ RasMol ]  
    Glu B:230 - Pro B:231   [ RasMol ]  
    Glu C:230 - Pro C:231   [ RasMol ]  
    Glu D:230 - Pro D:231   [ RasMol ]  
    Gly A:305 - Pro A:306   [ RasMol ]  
    Gly B:305 - Pro B:306   [ RasMol ]  
    Gly C:305 - Pro C:306   [ RasMol ]  
    Gly D:305 - Pro D:306   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3gn6
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8KDY2_CHLTE | Q8KDY2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q8KDY2_CHLTE | Q8KDY2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3GN6)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3GN6)