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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE-BASED DESIGN OF 7-AZAINDOLE-PYRROLIDINES AS INHIBITORS OF 11BETA-HYDROXYSTEROID-DEHYDROGENASE TYPE I

Authors :   E. Valeur, F. Lepifre, D. Roche, S. Christmann-Franck, P. Hillertz, D.

Date :   13 Mar 09 (Deposition) - 17 Nov 10 (Release) - 04 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.28

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   Alpha/Beta, Endoplasmic Reticulum, Glycoprotein, Lipid Metabolism, Membrane, Nadp, Oxidoreductase, Signal-Anchor, Steroid Metabolism, Transmembrane, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Valeur, S. Christmann-Franck, F. Lepifre, D. Carniato, D. Cravo, C. Charon, S. Bozec, D. Musil, P. Hillertz, L. Doare, F. Schmidlin, M. Lecomte, M. Schultz, D. Roche
Structure-Based Design Of 7-Azaindole-Pyrrolidine Amides As Inhibitors Of 11 Beta-Hydroxysteroid Dehydrogenase Type I.
Bioorg. Med. Chem. Lett. V. 22 5909 2012
PubMed-ID: 22901389 | Reference-DOI: 10.1016/J.BMCL.2012.07.070

Molecule 1 - CORTICOSTEROID 11-BETA-DEHYDROGENASE ISOZYME 1
	Chains	:	A, B, C, D, E, F, G, H
	EC Number	:	1.1.1.146
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	HSD11, HSD11B1, HSD11L
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	HUMANIZED MOUSE 11-BETA HSD
	Synonym	:	11-BETA-HYDROXYSTEROID DEHYDROGENASE 1, 11-BETA-HSD1, 11-DH, 11BETA-HSD1A

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 25)

No.	Name	Count	Type	Full Name
1	2M3	8	Ligand/Ion	2-METHYL-3-{(3S)-1-[(1-PYRIDIN-2-YLCYCLOPROPYL)CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-B]PYRIDINE
2	NDP	8	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	2M3	2	Ligand/Ion	2-METHYL-3-{(3S)-1-[(1-PYRIDIN-2-YLCYCLOPROPYL)CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-B]PYRIDINE
2	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	2M3	2	Ligand/Ion	2-METHYL-3-{(3S)-1-[(1-PYRIDIN-2-YLCYCLOPROPYL)CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-B]PYRIDINE
2	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	2M3	2	Ligand/Ion	2-METHYL-3-{(3S)-1-[(1-PYRIDIN-2-YLCYCLOPROPYL)CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-B]PYRIDINE
2	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 7)

No.	Name	Count	Type	Full Name
1	2M3	2	Ligand/Ion	2-METHYL-3-{(3S)-1-[(1-PYRIDIN-2-YLCYCLOPROPYL)CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-B]PYRIDINE
2	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	2M3 A:2 , GLY A:41 , SER A:43 , LYS A:44 , GLY A:45 , ILE A:46 , ARG A:66 , SER A:67 , GLY A:91 , THR A:92 , MET A:93 , ASN A:119 , HIS A:120 , ILE A:121 , VAL A:142 , ILE A:168 , SER A:169 , SER A:170 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , HOH A:290 , HOH A:297 , HOH A:306 , HOH A:310 , HOH A:400 , HOH A:468	BINDING SITE FOR RESIDUE NDP A 300
02	AC2	SOFTWARE	THR A:124 , SER A:170 , TYR A:177 , TYR A:183 , GLY A:216 , LEU A:217 , THR A:222 , ALA A:223 , NDP A:300 , HOH A:312 , TYR B:284	BINDING SITE FOR RESIDUE 2M3 A 2
03	AC3	SOFTWARE	2M3 B:1 , GLY B:41 , SER B:43 , LYS B:44 , GLY B:45 , ILE B:46 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , HIS B:120 , ILE B:121 , ILE B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , LEU B:217 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , HOH B:292 , HOH B:309 , HOH B:315 , HOH B:516	BINDING SITE FOR RESIDUE NDP B 300
04	AC4	SOFTWARE	GLY B:45 , ARG B:48 , THR B:220 , GLU B:221 , LYS B:238 , HOH B:309	BINDING SITE FOR RESIDUE SO4 B 2
05	AC5	SOFTWARE	TYR A:284 , THR B:124 , LEU B:126 , SER B:170 , TYR B:177 , TYR B:183 , GLY B:216 , LEU B:217 , THR B:222 , ALA B:223 , NDP B:300	BINDING SITE FOR RESIDUE 2M3 B 1
06	AC6	SOFTWARE	2M3 C:4 , GLY C:41 , SER C:43 , LYS C:44 , GLY C:45 , ILE C:46 , ARG C:66 , SER C:67 , THR C:92 , MET C:93 , ASN C:119 , HIS C:120 , ILE C:121 , ARG C:138 , ILE C:168 , SER C:169 , SER C:170 , TYR C:183 , LYS C:187 , LEU C:215 , GLY C:216 , LEU C:217 , ILE C:218 , THR C:220 , THR C:222 , ALA C:223 , HOH C:293 , HOH C:302 , HOH C:324 , HOH C:394 , HOH C:423 , HOH C:520	BINDING SITE FOR RESIDUE NDP C 300
07	AC7	SOFTWARE	ARG C:66 , GLN C:123 , ARG C:138 , HOH C:324 , HOH C:459	BINDING SITE FOR RESIDUE SO4 C 7
08	AC8	SOFTWARE	HOH C:18 , GLY C:45 , ARG C:48 , THR C:220 , GLU C:221 , LYS C:238 , HOH C:346 , HOH C:394	BINDING SITE FOR RESIDUE SO4 C 8
09	AC9	SOFTWARE	THR C:124 , LEU C:126 , SER C:170 , LEU C:171 , TYR C:177 , TYR C:183 , LEU C:215 , GLY C:216 , LEU C:217 , THR C:222 , ALA C:223 , ALA C:226 , NDP C:300 , HOH C:479 , TYR D:284	BINDING SITE FOR RESIDUE 2M3 C 4
10	BC1	SOFTWARE	2M3 D:3 , GLY D:41 , SER D:43 , LYS D:44 , GLY D:45 , ILE D:46 , ALA D:65 , ARG D:66 , SER D:67 , THR D:92 , MET D:93 , ASN D:119 , HIS D:120 , ILE D:121 , ILE D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , HOH D:294 , HOH D:310 , HOH D:326	BINDING SITE FOR RESIDUE NDP D 300
11	BC2	SOFTWARE	HOH D:10 , LYS D:44 , GLY D:45 , ARG D:48 , THR D:220 , GLU D:221 , LYS D:238 , HOH D:310 , HOH D:329	BINDING SITE FOR RESIDUE SO4 D 1
12	BC3	SOFTWARE	TYR C:284 , THR D:124 , LEU D:126 , SER D:170 , TYR D:177 , TYR D:183 , LEU D:215 , GLY D:216 , LEU D:217 , THR D:222 , ALA D:223 , ALA D:226 , NDP D:300 , HOH D:332	BINDING SITE FOR RESIDUE 2M3 D 3
13	BC4	SOFTWARE	2M3 E:7 , GLY E:41 , SER E:43 , LYS E:44 , GLY E:45 , ILE E:46 , ALA E:65 , ARG E:66 , SER E:67 , THR E:92 , MET E:93 , ASN E:119 , HIS E:120 , ILE E:121 , ILE E:168 , SER E:169 , SER E:170 , TYR E:183 , LYS E:187 , LEU E:215 , GLY E:216 , LEU E:217 , ILE E:218 , THR E:220 , THR E:222 , ALA E:223 , HOH E:291 , HOH E:311 , HOH E:316 , HOH E:461 , HOH E:475 , HOH E:521	BINDING SITE FOR RESIDUE NDP E 300
14	BC5	SOFTWARE	ARG E:66 , THR E:122 , GLN E:123 , ARG E:138 , HOH E:477	BINDING SITE FOR RESIDUE SO4 E 4
15	BC6	SOFTWARE	THR E:124 , LEU E:126 , SER E:170 , TYR E:177 , TYR E:183 , LEU E:215 , GLY E:216 , LEU E:217 , THR E:222 , ALA E:226 , HOH E:299 , NDP E:300 , TYR F:284	BINDING SITE FOR RESIDUE 2M3 E 7
16	BC7	SOFTWARE	HOH F:11 , GLY F:41 , SER F:43 , LYS F:44 , GLY F:45 , ILE F:46 , ALA F:65 , ARG F:66 , SER F:67 , THR F:92 , MET F:93 , ASN F:119 , HIS F:120 , ILE F:121 , ILE F:168 , SER F:169 , SER F:170 , TYR F:183 , LYS F:187 , LEU F:215 , GLY F:216 , LEU F:217 , ILE F:218 , THR F:220 , THR F:222 , ALA F:223 , 2M3 F:290 , HOH F:295 , HOH F:308 , HOH F:471 , HOH F:472 , HOH F:473	BINDING SITE FOR RESIDUE NDP F 300
17	BC8	SOFTWARE	GLY F:45 , ARG F:48 , THR F:220 , GLU F:221 , LYS F:238 , HOH F:323	BINDING SITE FOR RESIDUE SO4 F 5
18	BC9	SOFTWARE	TYR E:284 , ILE F:121 , THR F:124 , LEU F:126 , SER F:170 , TYR F:183 , GLY F:216 , LEU F:217 , THR F:222 , ALA F:223 , NDP F:300	BINDING SITE FOR RESIDUE 2M3 F 290
19	CC1	SOFTWARE	2M3 G:8 , GLY G:41 , SER G:43 , LYS G:44 , GLY G:45 , ILE G:46 , ARG G:66 , SER G:67 , GLY G:91 , THR G:92 , MET G:93 , ASN G:119 , HIS G:120 , ILE G:121 , ILE G:168 , SER G:169 , SER G:170 , TYR G:183 , LYS G:187 , LEU G:215 , GLY G:216 , LEU G:217 , ILE G:218 , THR G:220 , THR G:222 , ALA G:223 , HOH G:308 , HOH G:311 , HOH G:392	BINDING SITE FOR RESIDUE NDP G 300
20	CC2	SOFTWARE	LYS G:44 , GLY G:45 , ARG G:48 , THR G:220 , GLU G:221 , LYS G:238	BINDING SITE FOR RESIDUE SO4 G 9
21	CC3	SOFTWARE	ILE G:121 , THR G:124 , LEU G:126 , SER G:170 , TYR G:177 , TYR G:183 , GLY G:216 , LEU G:217 , THR G:222 , ALA G:226 , NDP G:300 , TYR H:284	BINDING SITE FOR RESIDUE 2M3 G 8
22	CC4	SOFTWARE	GLY H:41 , SER H:43 , LYS H:44 , GLY H:45 , ILE H:46 , ALA H:65 , ARG H:66 , SER H:67 , THR H:92 , MET H:93 , ASN H:119 , HIS H:120 , ILE H:121 , ILE H:168 , SER H:169 , SER H:170 , TYR H:183 , LYS H:187 , LEU H:215 , GLY H:216 , LEU H:217 , ILE H:218 , THR H:220 , THR H:222 , ALA H:223 , 2M3 H:290 , HOH H:302 , HOH H:307 , HOH H:480 , HOH H:481	BINDING SITE FOR RESIDUE NDP H 300
23	CC5	SOFTWARE	LYS H:225	BINDING SITE FOR RESIDUE SO4 H 3
24	CC6	SOFTWARE	HOH H:9 , GLY H:45 , ARG H:48 , GLU H:221 , LYS H:238 , HOH H:302	BINDING SITE FOR RESIDUE SO4 H 6
25	CC7	SOFTWARE	TYR G:284 , ILE H:121 , THR H:124 , SER H:125 , LEU H:126 , SER H:170 , TYR H:177 , TYR H:183 , LEU H:215 , GLY H:216 , LEU H:217 , THR H:222 , ALA H:226 , NDP H:300	BINDING SITE FOR RESIDUE 2M3 H 290

(no "SS Bond" information available for 3GMD)

(no "Cis Peptide Bond" information available for 3GMD)

(no "SAP(SNP)/Variant" information available for 3GMD)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	DHI1_MOUSE	170-198	8	A:170-198 B:170-198 C:170-198 D:170-198 E:170-198 F:170-198 G:170-198 H:170-198

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	DHI1_MOUSE	170-198	2	A:170-198 B:170-198 - - - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	DHI1_MOUSE	170-198	2	- - C:170-198 D:170-198 - - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	DHI1_MOUSE	170-198	2	- - - - E:170-198 F:170-198 - -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADH_SHORT	PS00061	Short-chain dehydrogenases/reductases family signature.	DHI1_MOUSE	170-198	2	- - - - - - G:170-198 H:170-198

(no "Exon" information available for 3GMD)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmda_ A: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhhh..eeee....hhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd A  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Chain B from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmdb_ B: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd B  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Chain C from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmdc_ C: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeee....hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhh.........hhhhhhhhhhhhhhh...eeee...hhhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: C:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd C  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Chain D from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmdd_ D: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh...eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee....hhhhhh.hhhhhhhhhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: D:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd D  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Chain E from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmde_ E: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: E:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd E  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Chain F from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmdf_ F: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: F:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd F  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Chain G from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmdg_ G: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh..eeeee...hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhh.........hhhhhhhhhhhhhhh...eeee....hhhhhh.hhhhhhhhhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: G:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd G  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Chain H from PDB  Type:PROTEIN  Length:264
 aligned with DHI1_MOUSE | P50172 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:264
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    
           DHI1_MOUSE    26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
               SCOP domains d3gmdh_ H: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh...eeeee...hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee....hhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: H:170-198    ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3gmd H  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKAVSGIVNAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMF 289
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: 11-beta-hydroxysteroid dehydrogenase 1 (34)

Mouse (Mus musculus) [TaxId: 10090] (5)

1a	d3gmda_	A:
1b	d3gmdg_	G:
1c	d3gmdh_	H:
1d	d3gmdb_	B:
1e	d3gmdc_	C:
1f	d3gmdd_	D:
1g	d3gmde_	E:
1h	d3gmdf_	F:

(no "CATH Domain" information available for 3GMD)

(no "Pfam Domain" information available for 3GMD)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (DHI1_MOUSE | P50172)

molecular function
	GO:0070524	11-beta-hydroxysteroid dehydrogenase (NADP+) activity	Catalysis of the reaction: an 11-beta-hydroxysteroid + NADP+ = an 11-oxosteroid + NADPH + H+.
	GO:0003845	11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity	Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H(+).
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0030324	lung development	The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0008202	steroid metabolic process	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
cellular component
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3gmd)

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	DHI1_MOUSE \| P50172
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	1.1.1.146
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	DHI1_MOUSE \| P50172	:	1y5m 1y5r 4k26 4nmh

(no "Related Entries Specified in the PDB File" available for 3GMD)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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