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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROBABLE SPERMIDINE SYNTHASE FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032
 
Authors :  K. Tan, H. Li, L. Freeman, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  09 Mar 09  (Deposition) - 24 Mar 09  (Release) - 24 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A
Keywords :  Apc62791, Spermidine Synthase, Corynebacterium Glutamicum Atcc 13032, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, H. Li, L. Freeman, A. Joachimiak
The Crystal Structure Of A Probable Spermidine Synthase From Corynebacterium Glutamicum Atcc 13032.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SPERMIDINE SYNTHASE
    Atcc: 13032
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CGL1237, CG1394
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM ATCC 13032
    Organism Taxid: 196627
    Strain: DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:95 , ALA A:97 , CYS A:98 , VAL A:115 , GLU A:117 , LEU A:122 , SER A:126BINDING SITE FOR RESIDUE FMT A 315

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GJY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:135 -Pro A:136

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GJY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GJY)

(-) Exons   (0, 0)

(no "Exon" information available for 3GJY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
 aligned with Q8NR27_CORGL | Q8NR27 from UniProtKB/TrEMBL  Length:314

    Alignment length:279
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287         
         Q8NR27_CORGL    18 TPIAGTYEGEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTEFFSSNSTEASAITRELLGGGVPAQYKDESWVRKFASGAQARHDGVSTLQMP 296
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3gjyA00 A:18-296 Vaccinia Virus protein VP39                                                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeeee......eeeeee..eeeeeee........hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh.......eeeee.hhhhhhhh.....eeeeee........hhhhhhhhhhhhhhhheeeeeeeeeeeee...hhhhhhhhhhhhhhh.eeeeeehhhhhh....eeeeeeee........hhhhhhhhhhhh......eeehhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gjy A  18 TPIAGTYEGEYSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYmRWIATGARAFIDAHQDASKLRITHLGGGACTmARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARmVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGmmEVFEHVAVIADPPmLKGRRYGNIILmGSDTEFFSSNSTEASAITRELLGGGVPAQYKDESWVRKFASGAQARHDGVSTLQmP 296
                                    27        37        47        57        67|       77        87        97  |    107       117       127       137       147       157       167       177       187       197       207     ||217       227|      237  |    247       257       267       277       287       | 
                                                                             68-MSE                         100-MSE                                        147-MSE                                                           213-MSE        228-MSE     240-MSE                                                295-MSE
                                                                                                                                                                                                                              214-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GJY)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GJY)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3GJY)

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