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(-) Description

Title :  CRYSTAL STRUCTURE OF DR_A0006 FROM DEINOCOCCUS RADIODURANS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET DRR147D
 
Authors :  J. Seetharaman, H. Neely, H. Wang, H. Janjua, E. L. Foote, R. Xiao, J. K. Everett, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong Northeast Structural Genomics Consortium (Nesg)
Date :  28 Feb 09  (Deposition) - 24 Mar 09  (Release) - 24 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Deinococcus Radiodurans, Dr_a0006, Structural Genomics, Psi- 2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, H. Neely, H. Wang, H. Janjua, E. L. Foote, R. Xiao, J. K. Everett, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Dr_a0006 From Deinococcus Radiodurans.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN DR_A0006
    Atcc: 13939
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21-23C
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DR_A0006
    Organism Scientific: DEINOCOCCUS RADIODURANS R1
    Organism Taxid: 243230
    Strain: R1 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A 
Biological Unit 3 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3GGN)

(-) Sites  (0, 0)

(no "Site" information available for 3GGN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GGN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:54 -Pro A:55

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GGN)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with Q9RZE3_DEIRA | Q9RZE3 from UniProtKB/TrEMBL  Length:268

    Alignment length:145
                                   109       119       129       139       149       159       169       179       189       199       209       219       229       239     
         Q9RZE3_DEIRA   100 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPAPLGTVSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELGH 244
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhh..hhhhhh....eeee....eeeeeee......eeeeeeeeeeee...eeeeee......eeeeeeeeee......eeeeeeeeee----------------hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ggn A   3 TVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPAPLGTVSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYR----------------EPSQQLRDDLMRFKREQELGL 147
                                    12        22        32        42        52        62        72        82        92       102       | -         -    |  132       142     
                                                                                                                                     110              127                    


Chain B from PDB  Type:PROTEIN  Length:131
 aligned with Q9RZE3_DEIRA | Q9RZE3 from UniProtKB/TrEMBL  Length:268

    Alignment length:146
                                   108       118       128       138       148       158       168       178       188       198       208       218       228       238      
         Q9RZE3_DEIRA    99 ETVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPAPLGTVSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARMFNQEPSQQLRDDLMRFKREQELGH 244
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..hhhhhhhhhhh..hhhhhh..eeeeee....eeeeeee......eeeeeeeeeeee...eeeeee......eeeeeeeeee......eeeeeeeeee..---------------hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ggn B   2 ETVVRDAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEAPAPLGTVSWEAELTADEPGKRIAWRSLPGARIENSGEVLFRPAPGARGTEVVVRLTYRPP---------------PSQQLRDDLMRFKREQELGL 147
                                    11        21        31        41        51        61        71        81        91       101       111|        -      |131       141      
                                                                                                                                        112             128
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GGN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GGN)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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    Ala A:54 - Pro A:55   [ RasMol ]  
 
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 Related Entries

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        Q9RZE3_DEIRA | Q9RZE3: 2kcz

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