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Title :   CRYSTAL STRUCTURE OF THE PDZ DOMAIN OF PDZ DOMAIN-CONTAINING PROTEIN GIPC2

Authors :   A. Chaikuad, V. Hozjan, W. Yue, C. Cooper, J. Elkins, A. C. W. Pike, A. K. R P. Filippakopoulos, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. C. Bountra, U. Oppermann, Structural Genomics Consortium (Sgc)

Date :   27 Feb 09 (Deposition) - 24 Mar 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: A,B,C  (2x)

Keywords :   Pdz Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Chaikuad, V. Hozjan, W. Yue, C. Cooper, J. Elkins, A. C. W. Pike, A. K. Roos, P. Filippakopoulos, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, U. Oppermann
Crystal Structure Of The Pdz Domain Of Pdz Domain-Containin Protein Gipc2
To Be Published
PubMed: search

Compounds

Molecule 1 - PDZ DOMAIN-CONTAINING PROTEIN GIPC2
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21(DE3)-R3-PRARE2
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	PDZ DOMAIN
	Gene	:	GIPC2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Structural Features

Chains, Units

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 3)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	SO4	4	Ligand/Ion	SULFATE ION

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU B:168 , TRP B:173 , LYS B:180 , LYS B:181 , SER C:-1 , MET C:0 , LYS C:112	BINDING SITE FOR RESIDUE SO4 B 1
2	AC2	SOFTWARE	HIS B:161 , PRO B:198 , LYS B:199	BINDING SITE FOR RESIDUE SO4 B 2
3	AC3	SOFTWARE	ASN B:169 , VAL B:171 , TRP B:173 , SER C:-1 , LYS C:112 , GLY C:113 , ILE C:196	BINDING SITE FOR RESIDUE GOL B 3

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	GIPC2_HUMAN	117-184	3	A:117-184 B:117-184 C:117-184

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	GIPC2_HUMAN	117-184	3	A:117-184 B:117-184 C:117-184

Biological Unit 2 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	GIPC2_HUMAN	117-184	6	A:117-184 B:117-184 C:117-184

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:95
 aligned with GIPC2_HUMAN | Q8TF65 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:101
                                   119       129       139       149       159       169       179       189       199       209 
          GIPC2_HUMAN   110 HVKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKAFEIELRSKA 210
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.......eeee.......eeeee...hhhhhh.......eeeee..ee....hhhhhhhhhhhh....eeeeeeeee...------ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: A:117-184 UniProt: 117-184                                -------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3gge A  -1 SMKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKS------SEA 204
                             ||    119       129       139       149       159       169       179       189       199 |     203 
                             0|                                                                                      201    202  
                            112

Chain B from PDB  Type:PROTEIN  Length:92
 aligned with GIPC2_HUMAN | Q8TF65 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:98
                                   122       132       142       152       162       172       182       192       202        
          GIPC2_HUMAN   113 GIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKAFEIELRSKA 210
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee......eeee.......eeeee................eeeee..ee....hhhhhhhhhhhh...eeeeeeee.....------eee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----PDZ  PDB: B:117-184 UniProt: 117-184                                -------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3gge B 113 GIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKS------SEA 204
                                   122       132       142       152       162       172       182       192        |-     |  
                                                                                                                  201    202

Chain C from PDB  Type:PROTEIN  Length:95
 aligned with GIPC2_HUMAN | Q8TF65 from UniProtKB/Swiss-Prot  Length:315

    Alignment length:101
                                   119       129       139       149       159       169       179       189       199       209 
          GIPC2_HUMAN   110 HVKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKAFEIELRSKA 210
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.......eeee.......eeeee...hhhhhh.......eeeee..ee....hhhhhhhhhhhh....eeeeeeeee...------... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------PDZ  PDB: C:117-184 UniProt: 117-184                                -------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3gge C  -1 SMKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKS------SEA 204
                             ||    119       129       139       149       159       169       179       189       199 |     203 
                             0|                                                                                      201    202  
                            112

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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