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(-) Description

Title :  CRYSTAL STRUCTURE OF FERRITIN:DNA-BINDING PROTEIN DPS FROM BRUCELLA MELITENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Date :  25 Feb 09  (Deposition) - 03 Mar 09  (Release) - 03 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Ssgcid, Ferritin, Dna-Binding Protein, Dps, Burkholderia Pseudomallei, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA PROTECTION DURING STARVATION PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BMEI1980
    Organism Scientific: BRUCELLA MELITENSIS
    Organism Taxid: 29459
    Strain: 1719B

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric/Biological Unit (1, 12)
No.NameCountTypeFull Name
1CA12Ligand/IonCALCIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:71 , GLU A:75 , HIS B:44 , HOH B:1925BINDING SITE FOR RESIDUE CA A 167
02AC2SOFTWAREHIS A:44 , HOH A:576 , HOH A:2031 , ASP B:71 , GLU B:75BINDING SITE FOR RESIDUE CA B 167
03AC3SOFTWAREASP C:71 , GLU C:75 , HIS I:44 , HOH I:1235 , HOH I:2051BINDING SITE FOR RESIDUE CA C 167
04AC4SOFTWAREASP D:71 , GLU D:75 , HOH D:1096 , HIS J:44 , HOH J:2073BINDING SITE FOR RESIDUE CA D 167
05AC5SOFTWAREASP E:71 , GLU E:75 , HOH E:1017 , HOH E:1869 , HIS F:44 , HOH F:2089BINDING SITE FOR RESIDUE CA E 167
06AC6SOFTWAREHIS E:44 , HOH E:1747 , HOH E:2082 , ASP F:71 , GLU F:75 , HOH F:1448BINDING SITE FOR RESIDUE CA F 167
07AC7SOFTWAREASP G:71 , GLU G:75 , HIS H:44 , HOH H:219 , HOH H:1976BINDING SITE FOR RESIDUE CA G 167
08AC8SOFTWAREHIS G:44 , HOH G:178 , HOH G:2134 , ASP H:71 , GLU H:75BINDING SITE FOR RESIDUE CA H 167
09AC9SOFTWAREHIS C:44 , HOH C:1137 , HOH C:2047 , ASP I:71 , GLU I:75BINDING SITE FOR RESIDUE CA I 167
10BC1SOFTWAREHIS D:44 , HOH D:924 , HOH D:2071 , ASP J:71 , GLU J:75BINDING SITE FOR RESIDUE CA J 167
11BC2SOFTWAREASP K:71 , GLU K:75 , HIS L:44 , HOH L:917 , HOH L:2180BINDING SITE FOR RESIDUE CA K 167
12BC3SOFTWAREHIS K:44 , HOH K:1014 , HOH K:1769 , ASP L:71 , GLU L:75BINDING SITE FOR RESIDUE CA L 167

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GE4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GE4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GE4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GE4)

(-) Exons   (0, 0)

(no "Exon" information available for 3GE4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4a_ A: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4A00 A:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 A   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain B from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4b_ B: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4B00 B:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 B   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain C from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4c_ C: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4C00 C:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 C   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain D from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4d_ D: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4D00 D:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 D   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain E from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4e_ E: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4E00 E:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 E   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain F from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4f_ F: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4F00 F:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 F   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain G from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4g_ G: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4G00 G:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 G   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain H from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4h_ H: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4H00 H:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 H   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain I from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4i_ I: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4I00 I:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 I   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain J from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4j_ J: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4J00 J:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 J   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain K from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4k_ K: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4K00 K:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 K   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain L from PDB  Type:PROTEIN  Length:161
 aligned with Q8YE98_BRUME | Q8YE98 from UniProtKB/TrEMBL  Length:180

    Alignment length:161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179 
         Q8YE98_BRUME    20 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 180
               SCOP domains d3ge4l_ L: automated matches                                                                                                                                      SCOP domains
               CATH domains 3ge4L00 L:6-166  [code=1.20.1260.10, no name defined]                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ge4 L   6 SMHATRNDLPSNTKTTMIALLNENLAATIDLALITKQAHWNLKGPQFIAVHEMLDGFRAELDDHVDTIAERAVQIGGTAYGTTQVVVKESRLKPYPTDIYAVHDHLVALIERYGDVANLVRKSIKDADDAGDDDTADIFTAASRSLDKALWFLEAHVQESN 166
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GE4)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q8YE98_BRUME | Q8YE98)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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