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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE LIPOPROTEIN SP_0198 FROM STREPTOCOCCUS PNEUMONIAE
 
Authors :  Y. Kim, R. Zhang, G. Joachimiak, P. Gornicki, A. Joachimiak, Midwest C Structural Genomics (Mcsg)
Date :  24 Feb 09  (Deposition) - 17 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Beta-Barrel, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Lipoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, R. Zhang, G. Joachimiak, P. Gornicki, A. Joachimiak
Crystal Structure Of Putative Lipoprotein Sp_0198 From Streptococcus Pneumoniae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIPOPROTEIN, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 26-152
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3K1Ligand/IonPOTASSIUM ION
4MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL8Ligand/IonGLYCEROL
3K-1Ligand/IonPOTASSIUM ION
4MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:133 , ASN A:134 , LYS A:153 , HOH A:321BINDING SITE FOR RESIDUE K A 201
2AC2SOFTWAREVAL A:131 , ASN A:132 , GLY A:133BINDING SITE FOR RESIDUE CL A 202
3AC3SOFTWAREASP A:125 , VAL A:126 , LYS A:127 , ASP A:140 , MSE A:141 , ASP A:142 , HOH A:367BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWAREGLU A:99 , LYS A:127 , ILE A:149 , HOH A:348 , HOH A:378 , HOH A:382BINDING SITE FOR RESIDUE GOL A 204
5AC5SOFTWAREGLU A:99 , LYS A:107 , LYS A:109 , HOH A:382BINDING SITE FOR RESIDUE GOL A 205
6AC6SOFTWAREGLN A:135 , GLN A:148BINDING SITE FOR RESIDUE GOL A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GE2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GE2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GE2)

(-) Exons   (0, 0)

(no "Exon" information available for 3GE2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
 aligned with A0A0H2UNA1_S | A0A0H2UNA1 from UniProtKB/TrEMBL  Length:152

    Alignment length:89
                                    73        83        93       103       113       123       133       143         
         A0A0H2UNA1_S    64 QPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTLDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK 152
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3ge2A00 A:65-153  [code=2.40.128.50, no name defined]                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeee..eeeeeeee..eeeeeee.....eeeeeeeee....eeee..eeeeeeee..eeeee....hhhhheeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 3ge2 A  65 QPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTFDSANQRmIIGDDVKIYTVNGNQIVVDDmDRDPSDQIVLTK 153
                                    74        84        94       104       114     | 124       134      |144         
                                                                                 120-MSE              141-MSE        


Chain A from PDB  Type:PROTEIN  Length:89
 aligned with A5M522_STREE | A5M522 from UniProtKB/TrEMBL  Length:152

    Alignment length:89
                                    73        83        93       103       113       123       133       143         
         A5M522_STREE    64 QPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTFDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK 152
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3ge2A00 A:65-153  [code=2.40.128.50, no name defined]                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeee..eeeeeeee..eeeeeee.....eeeeeeeee....eeee..eeeeeeee..eeeee....hhhhheeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 3ge2 A  65 QPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQKVKQVTFDSANQRmIIGDDVKIYTVNGNQIVVDDmDRDPSDQIVLTK 153
                                    74        84        94       104       114     | 124       134      |144         
                                                                                 120-MSE              141-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GE2)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GE2)

(-) Gene Ontology  (0, 0)

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