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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF ORNITHINE CARBAMOYLTRANSFERASE FROM GLOEOBACTER VIOLACEUS
 
Authors :  A. A. Fedorov, E. V. Fedorov, R. Toro, U. A. Ramagopal, J. M. Sauder, S. K. S. C. Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc)
Date :  23 Feb 09  (Deposition) - 14 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Structural Genomics, Nysgxrc, Target 9454P, Ornithine Carbamoyltransferase, Operon, Amino-Acid Biosynthesis, Arginine Biosynthesis, Transferase, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, E. V. Fedorov, R. Toro, U. A. Ramagopal, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Ornithine Carbamoyltransferase From Gloeobacter Violaceus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ORNITHINE CARBAMOYLTRANSFERASE
    Chains: A, B, C, D, E, F
    EC Number: 2.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ARGF, GLL3101
    Organism Scientific: GLOEOBACTER VIOLACEUS
    Organism Taxid: 251221
    Strain: PCC 7421
    Synonym: OTCASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3GD5)

(-) Sites  (0, 0)

(no "Site" information available for 3GD5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GD5)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Leu A:273 -Pro A:274
2Leu B:273 -Pro B:274
3Leu C:273 -Pro C:274
4Leu D:273 -Pro D:274
5Leu E:273 -Pro E:274
6Leu F:273 -Pro F:274

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GD5)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARBAMOYLTRANSFERASEPS00097 Aspartate and ornithine carbamoyltransferases signature.OTC_GLOVI53-60
 
 
 
 
 		  6A:55-62
B:55-62
C:55-62
D:55-62
E:55-62
F:55-62

(-) Exons   (0, 0)

(no "Exon" information available for 3GD5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
 aligned with OTC_GLOVI | Q7NGR7 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:304
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    
            OTC_GLOVI     8 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 311
               SCOP domains d3gd5a1 A:10-153 automated matches                                                                                                              d3gd5a2 A:154-313 automated matches                                                                                                                              SCOP domains
               CATH domains 3gd5A01 A:10-139,A:300-313  [code=3.40.50.1370, no name defined]                                                                  3gd5A02 A:140-299  [code=3.40.50.1370, no name defined]                                                                                                         3gd5A01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee----------.hhhhhhhhhh....eeeee..hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee....---------.hhhhhh....hhhhhhh.....eeee..........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------CARBAMOY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gd5 A  10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL----------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT---------HRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 313
                                    19        29        39        49        59        69        79|        - |      99       109       119       129       139       149       159       169       179       189       199       209       219       229     |   -     | 249       259       269       279       289       299       309    
                                                                                                 80         91                                                                                                                                             235       245                                                                    


Chain B from PDB  Type:PROTEIN  Length:285
 aligned with OTC_GLOVI | Q7NGR7 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:304
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    
            OTC_GLOVI     8 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 311
               SCOP domains d3gd5b1 B:10-153 automated matches                                                                                                              d3gd5b2 B:154-313 automated matches                                                                                                                              SCOP domains
               CATH domains 3gd5B01 B:10-139,B:300-313  [code=3.40.50.1370, no name defined]                                                                  3gd5B02 B:140-299  [code=3.40.50.1370, no name defined]                                                                                                         3gd5B01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee----------.hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee....---------hhhhhhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------CARBAMOY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gd5 B  10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL----------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT---------HRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 313
                                    19        29        39        49        59        69        79|        - |      99       109       119       129       139       149       159       169       179       189       199       209       219       229     |   -     | 249       259       269       279       289       299       309    
                                                                                                 80         91                                                                                                                                             235       245                                                                    


Chain C from PDB  Type:PROTEIN  Length:285
 aligned with OTC_GLOVI | Q7NGR7 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:304
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    
            OTC_GLOVI     8 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 311
               SCOP domains d3gd5c1 C:10-153 automated matches                                                                                                              d3gd5c2 C:154-313 automated matches                                                                                                                              SCOP domains
               CATH domains 3gd5C01 C:10-139,C:300-313  [code=3.40.50.1370, no name defined]                                                                  3gd5C02 C:140-299  [code=3.40.50.1370, no name defined]                                                                                                         3gd5C01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee----------.hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee.hhhhh.hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee....---------hhhhhhh....hhhhhhh.....eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------CARBAMOY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gd5 C  10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL----------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT---------HRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 313
                                    19        29        39        49        59        69        79|        - |      99       109       119       129       139       149       159       169       179       189       199       209       219       229     |   -     | 249       259       269       279       289       299       309    
                                                                                                 80         91                                                                                                                                             235       245                                                                    


Chain D from PDB  Type:PROTEIN  Length:285
 aligned with OTC_GLOVI | Q7NGR7 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:304
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    
            OTC_GLOVI     8 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 311
               SCOP domains d3gd5d1 D:10-153 automated matches                                                                                                              d3gd5d2 D:154-313 automated matches                                                                                                                              SCOP domains
               CATH domains 3gd5D01 D:10-139,D:300-313  [code=3.40.50.1370, no name defined]                                                                  3gd5D02 D:140-299  [code=3.40.50.1370, no name defined]                                                                                                         3gd5D01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeee----------.hhhhhhhhhh....eeeee..hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee....---------hhhhhhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------CARBAMOY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gd5 D  10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL----------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT---------HRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 313
                                    19        29        39        49        59        69        79|        - |      99       109       119       129       139       149       159       169       179       189       199       209       219       229     |   -     | 249       259       269       279       289       299       309    
                                                                                                 80         91                                                                                                                                             235       245                                                                    


Chain E from PDB  Type:PROTEIN  Length:285
 aligned with OTC_GLOVI | Q7NGR7 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:304
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    
            OTC_GLOVI     8 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 311
               SCOP domains d3gd5e1 E:10-153 automated matches                                                                                                              d3gd5e2 E:154-313 automated matches                                                                                                                              SCOP domains
               CATH domains 3gd5E01 E:10-139,E:300-313  [code=3.40.50.1370, no name defined]                                                                  3gd5E02 E:140-299  [code=3.40.50.1370, no name defined]                                                                                                         3gd5E01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhh.........eeeeee...hhhhhhhhhhhhhhh..eeee.----------.hhhhhhhhhhhhh..eeee..hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee....---------.hhhhhhhhh.hhhhhh......eeee..........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------CARBAMOY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gd5 E  10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL----------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT---------HRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 313
                                    19        29        39        49        59        69        79|        - |      99       109       119       129       139       149       159       169       179       189       199       209       219       229     |   -     | 249       259       269       279       289       299       309    
                                                                                                 80         91                                                                                                                                             235       245                                                                    


Chain F from PDB  Type:PROTEIN  Length:285
 aligned with OTC_GLOVI | Q7NGR7 from UniProtKB/Swiss-Prot  Length:313

    Alignment length:304
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    
            OTC_GLOVI     8 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 311
               SCOP domains d3gd5f1 F:10-153 automated matches                                                                                                              d3gd5f2 F:154-313 automated matches                                                                                                                              SCOP domains
               CATH domains 3gd5F01 F:10-139,F:300-313  [code=3.40.50.1370, no name defined]                                                                  3gd5F02 F:140-299  [code=3.40.50.1370, no name defined]                                                                                                         3gd5F01        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhh...eeeee----------.hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee.hhhhh.hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee....---------hhhhhhh....hhhhhhhh....eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------CARBAMOY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gd5 F  10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDL----------EPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT---------HRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMG 313
                                    19        29        39        49        59        69        79|        - |      99       109       119       129       139       149       159       169       179       189       199       209       219       229     |   -     | 249       259       269       279       289       299       309    
                                                                                                 80         91                                                                                                                                             235       245
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: ATC-like (129)
(-)
Superfamily: Aspartate/ornithine carbamoyltransferase (122)
(-)
Family: automated matches (35)
(-)
Protein domain: automated matches (35)
(-)
Gloeobacter violaceus [TaxId: 251221] (1)
1ad3gd5a1A:10-153
1bd3gd5a2A:154-313
1cd3gd5f1F:10-153
1dd3gd5f2F:154-313
1ed3gd5b1B:10-153
1fd3gd5b2B:154-313
1gd3gd5c1C:10-153
1hd3gd5c2C:154-313
1id3gd5d1D:10-153
1jd3gd5d2D:154-313
1kd3gd5e1E:10-153
1ld3gd5e2E:154-313

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: [code=3.40.50.1370, no name defined] (91)
(-)
Gloeobacter violaceus pcc 7421. Organism_taxid: 251221. Strain: pcc 7421. (1)
1a3gd5A02A:140-299
1b3gd5B02B:140-299
1c3gd5E01E:10-139,E:300-313
1d3gd5F01F:10-139,F:300-313
1e3gd5C02C:140-299
1f3gd5D02D:140-299
1g3gd5E02E:140-299
1h3gd5F02F:140-299
1i3gd5A01A:10-139,A:300-313
1j3gd5B01B:10-139,B:300-313
1k3gd5C01C:10-139,C:300-313
1l3gd5D01D:10-139,D:300-313

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GD5)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (OTC_GLOVI | Q7NGR7)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
    GO:0016743    carboxyl- or carbamoyltransferase activity    Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
    GO:0004585    ornithine carbamoyltransferase activity    Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0042450    arginine biosynthetic process via ornithine    The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0006520    cellular amino acid metabolic process    The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
    GO:0006591    ornithine metabolic process    The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.
    GO:0000050    urea cycle    The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

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Asymmetric/Biological Unit
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(no "Sites" information available for 3gd5)
 
  Cis Peptide Bonds
    Leu A:273 - Pro A:274   [ RasMol ]  
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