3GAN - JenaLib

Title :   CRYSTAL STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT3G22680 WITH BOUND SURAMIN

Authors :   E. S. Burgie, C. A. Bingman, G. E. Wesenberg, G. N. Phillips Jr. , Center For Eukaryotic Structural Genomics (Cesg)

Date :   17 Feb 09 (Deposition) - 03 Mar 09 (Release) - 03 Mar 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Suramin, Structural Genomics Functional Follow-Up Study, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. S. Burgie, C. A. Bingman, G. E. Wesenberg, G. N. Phillips Jr.
Crystal Structure Of Gene Product From Arabidopsis Thaliana At3G22680 With Bound Suramin
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN AT3G22680
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVP13
	Expression System Strain	:	B834 P(RARE2)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	AT3G22680, AT3G22680.1, MWI23.5, Q9LUJ3, Y3268_ARATH
	Organism Common	:	MOUSE-EAR CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Strain	:	CV. COLUMBIA

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 8)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	SVR	2	Ligand/Ion	8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID

Biological Unit 1 (2, 7)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	SVR	2	Ligand/Ion	8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID

Biological Unit 2 (2, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	SVR	4	Ligand/Ion	8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:48 , GLN A:51 , VAL A:52 , PRO A:53 , GLY A:59 , LEU A:61 , PRO A:63 , GLY A:79 , GLN A:80 , PRO A:81 , ARG A:106 , ASP A:108 , HIS A:112 , TRP A:140 , TYR A:146 , ILE A:150 , ASP A:151 , PRO A:152 , ILE A:153 , HOH A:176 , HOH A:189 , HOH A:207	BINDING SITE FOR RESIDUE SVR A 158
2	AC2	SOFTWARE	ARG A:58 , HIS A:112 , THR A:114 , LYS A:115 , ALA A:118 , LEU A:122 , PHE A:154	BINDING SITE FOR RESIDUE SVR A 159
3	AC3	SOFTWARE	PHE A:64 , THR A:65 , GLY A:69	BINDING SITE FOR RESIDUE CL A 160

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:113
 aligned with RDM1_ARATH | Q9LUJ3 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:119
                                    52        62        72        82        92       102       112       122       132       142       152         
           RDM1_ARATH    43 SLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFP 161
               SCOP domains d3gana_ A: Hypothetical protein At3g22680                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.------.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 3gan A  37 SLLRRAEmYQDYmKQVPIPTNRGSLIPFTSWVGLSISmKQLYGQPLHYLTNVLLQRWDQSRF------QRLDSIIHPTKAEATIWLVEEIHRLTPSHLHmALLWRSDPmYHSFIDPIFP 155
                                   |46  |     56        66       |76        86        96 |     106       116       126       136       146         
                                  44-MSE|                       74-MSE                  98    105                            136-MSE  145-MSE      
                                       49-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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