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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PROTEIN WITH UNKNOWN FUNCTION FROM CLOSTRIDIUM ACETOBUTYLICUM ATCC 824
 
Authors :  R. Zhang, R. Wu, J. Abdullah, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  09 Feb 09  (Deposition) - 17 Mar 09  (Release) - 17 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,D,E  (1x)
Biol. Unit 2:  C,F,G,H  (1x)
Keywords :  Protein With Unknown Fuction, Structural Genomics, Psi, Mcsg, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, R. Wu, J. Abdullah, A. Joachimiak
The Crystal Structure Of The Protein With Unknown Function From Clostridium Acetobutylicum Atcc 824
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPF0311 PROTEIN CA_C3321
    Atcc: 824
    Chains: A, B, D, E, C, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CA_C3321
    Organism Scientific: CLOSTRIDIUM ACETOBUTYLICUM ATCC 824
    Organism Taxid: 272562
    Strain: DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB DE   
Biological Unit 2 (1x):   C  FGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3G7G)

(-) Sites  (0, 0)

(no "Site" information available for 3G7G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3G7G)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys G:106 -Ser G:107

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3G7G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3G7G)

(-) Exons   (0, 0)

(no "Exon" information available for 3G7G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:151
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157 
          Y3321_CLOAB     8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g7gA00 A:8-158  [code=2.40.160.20, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee...eeeeee...eeeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee.hhhhhhhhhhh...hhhhheeeeeeeeee.hhhhhhhhh..eeeeee.--..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g7g A   8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASR--ENVLLKFYKIS 158
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       | -|      157 
                                                                                                                                                                   145  |          
                                                                                                                                                                      148          


Chain B from PDB  Type:PROTEIN  Length:144
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:150
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158
          Y3321_CLOAB     9 MNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3g7gB00 B:9-158  [code=2.40.160.20, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee...eeeeee...eeeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee.hhhhhhhhh------....eeeeeeeeee.hhhhhhhhh..eeeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3g7g B   9 MNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVK------PNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
                                    18        28        38        48        58        68        78        88        98       | -    |  118       128       138       148       158
                                                                                                                           106    113                                             


Chain C from PDB  Type:PROTEIN  Length:144
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:150
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158
          Y3321_CLOAB     9 MNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3g7gC00 C:9-158  [code=2.40.160.20, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee...eeeeee...eeeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee.hhhhh...------hhhhheeeeeeeeee.hhhhhhhhh..eeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3g7g C   9 MNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAV------DPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
                                    18        28        38        48        58        68        78        88        98      |  -   |   118       128       138       148       158
                                                                                                                          105    112                                              


Chain D from PDB  Type:PROTEIN  Length:148
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:151
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157 
          Y3321_CLOAB     8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g7gD00 D:8-158  [code=2.40.160.20, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee...eeeeee...eeeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee.hhhhhhhhhhh...hhhhheeeeeeeeee.hhhhhhhhh..eeeeee.---.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g7g D   8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASR---NVLLKFYKIS 158
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       | - |     157 
                                                                                                                                                                   145 149         


Chain E from PDB  Type:PROTEIN  Length:135
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:151
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157 
          Y3321_CLOAB     8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g7gE00 E:8-158  [code=2.40.160.20, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee...eeeee.....eeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee..--------------....eeeeeeeeee.hhhhhhhhh..eeeeee..--.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g7g E   8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVP--------------PNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRL--NVLLKFYKIS 158
                                    17        27        37        47        57        67        77        87        97|        -     | 117       127       137        |- |     157 
                                                                                                                     98            113                              146  |         
                                                                                                                                                                       149         


Chain F from PDB  Type:PROTEIN  Length:148
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:151
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157 
          Y3321_CLOAB     8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g7gF00 F:8-158  [code=2.40.160.20, no name defined]                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee...eeeeee...eeeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee.hhhhhhhhh---..hhhhheeeeeeeeee.hhhhhhhhh..eeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g7g F   8 EMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVK---FVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
                                    17        27        37        47        57        67        77        87        97        |-  |    117       127       137       147       157 
                                                                                                                            106 110                                                


Chain G from PDB  Type:PROTEIN  Length:146
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:150
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158
          Y3321_CLOAB     9 MNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3g7gG00 G:9-158  [code=2.40.160.20, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee...eeeeee...eeeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee.hhhhhhhhh..----....eeeeeeeeee.hhhhhhhhh..eeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3g7g G   9 MNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSG----PNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
                                    18        28        38        48        58        68        78        88        98       108    |  118       128       138       148       158
                                                                                                                             108  113                                             


Chain H from PDB  Type:PROTEIN  Length:152
 aligned with Y3321_CLOAB | Q97DZ9 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:154
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154    
          Y3321_CLOAB     5 NIKEMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSGEFVDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g7gH00 H:5-158  [code=2.40.160.20, no name defined]                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee...eeeeee...eeeeeeeeeeeeee.....eee....eeeeee.....eeeeeeeeeee....eeeeeeeeeee.hhhhhhhhhhh--.hhhhheeeeeeeeee.hhhhhhhhh..eeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g7g H   5 NIKEMNYEEVFSITITVDKPILIGQDDIVGRRQLIPIISGKVSGNNFNGKVLPGGIDSQIVRPDGKCELSARYAIRLDDGAAIYIENNGIRTVPDEYIEAVKSG--VDPNAYYFRTIPTFETYSPKYKWMMNHIFVCCASRLPENVLLKFYKIS 158
                                    14        24        34        44        54        64        74        84        94       104   |  |114       124       134       144       154    
                                                                                                                                 108  |                                               
                                                                                                                                    111
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3G7G)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3G7G)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Y3321_CLOAB | Q97DZ9)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

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    Lys G:106 - Ser G:107   [ RasMol ]  
 
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 Related Entries

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