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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN D-AMINO ACID OXIDASE IN COMPLEX WITH HYDROXYQUINOLIN-2(1H)
 
Authors :  A. Duplantier, S. Liu
Date :  02 Feb 09  (Deposition) - 23 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  D-Amino Acid Oxidase, Fad, Flavoprotein, Oxidoreductase, Peroxisome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Duplantier, S. L. Becker, M. J. Bohanon, K. A. Borzilleri, B. A. Chrunyk, J. T. Downs, L. Y. Hu, A. El-Kattan, L. C. James, S. Liu, J. Lu, N. Maklad, M. N. Mansour, S. Mente, M. A. Piotrowski, S. M. Sakya, S. Sheehan, S. J. Steyn, C. A. Strick, V. A. Williams, L. Zhang
Discovery, Sar, And Pharmacokinetics Of A Novel 3-Hydroxyquinolin-2(1H)-One Series Of Potent D-Amino Acid Oxidase (Daao) Inhibitors
J. Med. Chem. V. 52 3576 2009
PubMed-ID: 19438227  |  Reference-DOI: 10.1021/JM900128W

(-) Compounds

Molecule 1 - D-AMINO-ACID OXIDASE
    Chains: A, B, C, D
    EC Number: 1.4.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Gene: DAO, DAMOX
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DAMOX, DAAO, DAO

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2G3E4Ligand/Ion3-HYDROXYQUINOLIN-2(1H)-ONE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2G3E2Ligand/Ion3-HYDROXYQUINOLIN-2(1H)-ONE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2G3E2Ligand/Ion3-HYDROXYQUINOLIN-2(1H)-ONE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:6 , GLY A:7 , ALA A:8 , GLY A:9 , VAL A:10 , ILE A:11 , ALA A:36 , ASP A:37 , ARG A:38 , THR A:43 , THR A:44 , THR A:45 , ALA A:48 , GLY A:50 , LEU A:51 , ARG A:162 , LYS A:163 , VAL A:164 , CYS A:181 , THR A:182 , GLY A:183 , TRP A:185 , ARG A:283 , GLY A:312 , GLY A:313 , TYR A:314 , GLY A:315 , LEU A:316 , THR A:317 , G3E A:353 , HOH A:374 , HOH A:393 , HOH A:398 , HOH A:401 , HOH A:406 , HOH A:407 , HOH A:409BINDING SITE FOR RESIDUE FAD A 352
2AC2SOFTWARELEU A:51 , TYR A:224 , TYR A:228 , ARG A:283 , GLY A:313 , FAD A:352 , HOH A:407BINDING SITE FOR RESIDUE G3E A 353
3AC3SOFTWAREGLY B:7 , ALA B:8 , GLY B:9 , VAL B:10 , ILE B:11 , ALA B:36 , ASP B:37 , ARG B:38 , THR B:43 , THR B:44 , THR B:45 , ALA B:48 , ALA B:49 , GLY B:50 , LEU B:51 , ARG B:162 , LYS B:163 , VAL B:164 , CYS B:181 , THR B:182 , TRP B:185 , ARG B:283 , GLY B:312 , GLY B:313 , TYR B:314 , GLY B:315 , LEU B:316 , THR B:317 , G3E B:353 , HOH B:359 , HOH B:373 , HOH B:387 , HOH B:394BINDING SITE FOR RESIDUE FAD B 352
4AC4SOFTWARELEU B:51 , TYR B:224 , TYR B:228 , ARG B:283 , GLY B:313 , FAD B:352BINDING SITE FOR RESIDUE G3E B 353
5AC5SOFTWAREGLY C:7 , ALA C:8 , GLY C:9 , VAL C:10 , ILE C:11 , ALA C:36 , ASP C:37 , ARG C:38 , THR C:43 , THR C:44 , THR C:45 , ALA C:48 , ALA C:49 , GLY C:50 , LEU C:51 , ARG C:162 , LYS C:163 , VAL C:164 , CYS C:181 , THR C:182 , GLY C:183 , TRP C:185 , ARG C:283 , GLY C:312 , GLY C:313 , TYR C:314 , GLY C:315 , LEU C:316 , THR C:317 , G3E C:353 , HOH C:368 , HOH C:370 , HOH C:377 , HOH C:402 , HOH C:405BINDING SITE FOR RESIDUE FAD C 352
6AC6SOFTWARELEU C:51 , TYR C:224 , TYR C:228 , ARG C:283 , GLY C:313 , FAD C:352BINDING SITE FOR RESIDUE G3E C 353
7AC7SOFTWAREGLY D:7 , ALA D:8 , GLY D:9 , VAL D:10 , ILE D:11 , ALA D:36 , ASP D:37 , ARG D:38 , THR D:44 , THR D:45 , ALA D:48 , GLY D:50 , LEU D:51 , ARG D:162 , LYS D:163 , VAL D:164 , CYS D:181 , THR D:182 , GLY D:183 , TRP D:185 , GLY D:312 , GLY D:313 , TYR D:314 , GLY D:315 , LEU D:316 , THR D:317 , G3E D:353 , HOH D:355 , HOH D:356 , HOH D:387 , HOH D:402 , HOH D:404 , HOH D:406BINDING SITE FOR RESIDUE FAD D 352
8AC8SOFTWARELEU D:51 , TYR D:224 , TYR D:228 , ARG D:283 , GLY D:313 , FAD D:352BINDING SITE FOR RESIDUE G3E D 353

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3G3E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3G3E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3G3E)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DAOPS00677 D-amino acid oxidases signature.OXDA_HUMAN305-323
 
 
 		  4A:305-323
B:305-323
C:305-323
D:305-323
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DAOPS00677 D-amino acid oxidases signature.OXDA_HUMAN305-323
 
 
 		  2A:305-323
B:305-323
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DAOPS00677 D-amino acid oxidases signature.OXDA_HUMAN305-323
 
 
 		  2-
-
C:305-323
D:305-323

(-) Exons   (10, 40)

Asymmetric Unit (10, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002284761ENSE00001232085chr12:109273857-109274000144OXDA_HUMAN-00--
1.2ENST000002284762ENSE00001232101chr12:109278774-109278976203OXDA_HUMAN1-65654A:1-65
B:1-65
C:1-65
D:1-65		65
65
65
65
1.3ENST000002284763ENSE00001232078chr12:109281226-109281340115OXDA_HUMAN65-103394A:65-103
B:65-103
C:65-103
D:65-103		39
39
39
39
1.4ENST000002284764ENSE00001232074chr12:109283245-10928332177OXDA_HUMAN104-129264A:104-129
B:104-129
C:104-129
D:104-129		26
26
26
26
1.5ENST000002284765ENSE00001232068chr12:109283984-10928404966OXDA_HUMAN129-151234A:129-151
B:129-151
C:129-151
D:129-151		23
23
23
23
1.6ENST000002284766ENSE00001232066chr12:109286758-10928681255OXDA_HUMAN151-169194A:151-169
B:151-169
C:151-169
D:151-169		19
19
19
19
1.7ENST000002284767ENSE00001232061chr12:109288039-109288143105OXDA_HUMAN170-204354A:170-204
B:170-204
C:170-204
D:170-204		35
35
35
35
1.8ENST000002284768ENSE00000754687chr12:109290782-10929086483OXDA_HUMAN205-232284A:205-232
B:205-232
C:205-232
D:205-232		28
28
28
28
1.9ENST000002284769ENSE00001232053chr12:109292455-109292572118OXDA_HUMAN232-271404A:232-271
B:232-271
C:232-271
D:232-271		40
40
40
40
1.10ENST0000022847610ENSE00001232046chr12:109293153-10929325199OXDA_HUMAN272-304334A:272-304
B:272-304
C:272-304
D:272-304		33
33
33
33
1.11ENST0000022847611ENSE00001232095chr12:109294180-109294709530OXDA_HUMAN305-347434A:305-340
B:305-340
C:305-340
D:305-340		36
36
36
36

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
 aligned with OXDA_HUMAN | P14920 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
           OXDA_HUMAN     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g3eA01 A:1-88,A:140-195,A:286-340 NAD(P)-binding Rossmann-like Domain                  3g3eA02 A:89-139,A:196-285                         3g3eA01 A:1-88,A:140-195,A:286-340                      3g3eA02 A:89-139,A:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      3g3eA01 A:1-88,A:140-195,A:286-340                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhh..............hhhhhhhhhhhhhhhh.....hhhhhheeeeeeeeee......hhhhhh.eeeee.hhhhhh......eeeeeeeeeehhhhhhhhhhhhhhhh..eeee....hhhhhhhh...eeee.hhhhhhhh......eeeeeeeeeee......eeee...........eeee....eeee...ee.......hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee....eeeeeee......eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: A:305-323----------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:1-65 UniProt: 1-65                              --------------------------------------Exon 1.4  PDB: A:104-129  ---------------------Exon 1.6           Exon 1.7  PDB: A:170-204           Exon 1.8  PDB: A:205-232    ---------------------------------------Exon 1.10  PDB: A:272-304        Exon 1.11  PDB: A:305-340            Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.3  PDB: A:65-103 UniProt: 65-103-------------------------Exon 1.5  PDB: A:129-15--------------------------------------------------------------------------------Exon 1.9  PDB: A:232-271                --------------------------------------------------------------------- Transcript 1 (2)
                 3g3e A   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain B from PDB  Type:PROTEIN  Length:340
 aligned with OXDA_HUMAN | P14920 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
           OXDA_HUMAN     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g3eB01 B:1-88,B:140-195,B:286-340 NAD(P)-binding Rossmann-like Domain                  3g3eB02 B:89-139,B:196-285                         3g3eB01 B:1-88,B:140-195,B:286-340                      3g3eB02 B:89-139,B:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      3g3eB01 B:1-88,B:140-195,B:286-340                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhh..............hhhhhhhhhhhhhhhh.....hhhhhheeeeeeeeee......hhhhhh.eeeee.hhhhhh......eeeeeeeeeehhhhhhhhhhhhhhhh..eeee....hhhhhhhh...eeee.hhhhhhhh......eeeeeeeeeee......eeee...........eeee....eeee...ee.......hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee....eeeeeee......eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: B:305-323----------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:1-65 UniProt: 1-65                              --------------------------------------Exon 1.4  PDB: B:104-129  ---------------------Exon 1.6           Exon 1.7  PDB: B:170-204           Exon 1.8  PDB: B:205-232    ---------------------------------------Exon 1.10  PDB: B:272-304        Exon 1.11  PDB: B:305-340            Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.3  PDB: B:65-103 UniProt: 65-103-------------------------Exon 1.5  PDB: B:129-15--------------------------------------------------------------------------------Exon 1.9  PDB: B:232-271                --------------------------------------------------------------------- Transcript 1 (2)
                 3g3e B   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain C from PDB  Type:PROTEIN  Length:340
 aligned with OXDA_HUMAN | P14920 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
           OXDA_HUMAN     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g3eC01 C:1-88,C:140-195,C:286-340 NAD(P)-binding Rossmann-like Domain                  3g3eC02 C:89-139,C:196-285                         3g3eC01 C:1-88,C:140-195,C:286-340                      3g3eC02 C:89-139,C:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      3g3eC01 C:1-88,C:140-195,C:286-340                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhhh.............hhhhhhhhhhhhhhhh.....hhhhhheeeeeeeeee......hhhhhh.eeeee.hhhhhh......eeeeeeeeeehhhhhhhhhhhhhhhh..eeee....hhhhhhhh...eeee.hhhhhhhh......eeeeeeeeeee......eeee...........eeee....eeee...ee.......hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee....eeeeeee......eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: C:305-323----------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:1-65 UniProt: 1-65                              --------------------------------------Exon 1.4  PDB: C:104-129  ---------------------Exon 1.6           Exon 1.7  PDB: C:170-204           Exon 1.8  PDB: C:205-232    ---------------------------------------Exon 1.10  PDB: C:272-304        Exon 1.11  PDB: C:305-340            Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.3  PDB: C:65-103 UniProt: 65-103-------------------------Exon 1.5  PDB: C:129-15--------------------------------------------------------------------------------Exon 1.9  PDB: C:232-271                --------------------------------------------------------------------- Transcript 1 (2)
                 3g3e C   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340


Chain D from PDB  Type:PROTEIN  Length:340
 aligned with OXDA_HUMAN | P14920 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
           OXDA_HUMAN     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g3eD01 D:1-88,D:140-195,D:286-340 NAD(P)-binding Rossmann-like Domain                  3g3eD02 D:89-139,D:196-285                         3g3eD01 D:1-88,D:140-195,D:286-340                      3g3eD02 D:89-139,D:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      3g3eD01 D:1-88,D:140-195,D:286-340                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhh......eeeeee..hhhhhhhhh..............hhhhhhhhhhhhhhhh.....hhhhhheeeeeeeeee......hhhhhh.eeeee.hhhhhh......eeeeeeeeeehhhhhhhhhhhhhhhh..eeee....hhhhhhhh...eeee.hhhhhhhh......eeeeeeeeeee......eeee...........eeee....eeee...ee.......hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee....eeeeeee......eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: D:305-323----------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:1-65 UniProt: 1-65                              --------------------------------------Exon 1.4  PDB: D:104-129  ---------------------Exon 1.6           Exon 1.7  PDB: D:170-204           Exon 1.8  PDB: D:205-232    ---------------------------------------Exon 1.10  PDB: D:272-304        Exon 1.11  PDB: D:305-340            Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------Exon 1.3  PDB: D:65-103 UniProt: 65-103-------------------------Exon 1.5  PDB: D:129-15--------------------------------------------------------------------------------Exon 1.9  PDB: D:232-271                --------------------------------------------------------------------- Transcript 1 (2)
                 3g3e D   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRILEEKKLS 340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3G3E)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: D-Amino Acid Oxidase; Chain A, domain 2 (80)
(-)
Homologous Superfamily: D-Amino Acid Oxidase, subunit A, domain 2 (80)
(-)
Human (Homo sapiens) (6)
1a3g3eA02A:89-139,A:196-285
1b3g3eB02B:89-139,B:196-285
1c3g3eC02C:89-139,C:196-285
1d3g3eD02D:89-139,D:196-285
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)
(-)
Human (Homo sapiens) (188)
2a3g3eA01A:1-88,A:140-195,A:286-340
2b3g3eB01B:1-88,B:140-195,B:286-340
2c3g3eC01C:1-88,C:140-195,C:286-340
2d3g3eD01D:1-88,D:140-195,D:286-340

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3G3E)

(-) Gene Ontology  (20, 20)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (OXDA_HUMAN | P14920)
molecular function
    GO:0003884    D-amino-acid oxidase activity    Catalysis of the reaction: a D-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide.
    GO:0071949    FAD binding    Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0055130    D-alanine catabolic process    The chemical reactions and pathways resulting in the breakdown of D-alanine, the D-enantiomer of the amino acid alanine.
    GO:0046416    D-amino acid metabolic process    The chemical reactions and pathways involving D-amino acids, the D-enantiomers of amino acids.
    GO:0036088    D-serine catabolic process    The chemical reactions and pathways resulting in the breakdown of D-serine, the D-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
    GO:0070178    D-serine metabolic process    The chemical reactions and pathways involving D-serine, the D-enantiomer of serine, i.e. (2R)-2-amino-3-hydroxypropanoic acid.
    GO:0042416    dopamine biosynthetic process    The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.
    GO:0046487    glyoxylate metabolic process    The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006562    proline catabolic process    The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005741    mitochondrial outer membrane    The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
    GO:0005782    peroxisomal matrix    The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.
    GO:0005778    peroxisomal membrane    The lipid bilayer surrounding a peroxisome.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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  OXDA_HUMAN | P14920
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OXDA_HUMAN | P14920: 2du8 2e48 2e49 2e4a 2e82 2gnz 3cuk 3w4i 3w4j 3w4k 3znn 3zno 3znp 3znq 4qfc 4qfd

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3G3E)