3G2E - JenaLib

Title :   STRUCTURE OF PUTATIVE OORC SUBUNIT OF 2-OXOGLUTARATE:ACCEPTOR OXIDOREDUCTASE FROM CAMPYLOBACTER JEJUNI

Authors :   U. A. Ramagopal, R. Toro, S. Miller, M. Gilmore, S. K. Burley, S. C. Almo, Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   31 Jan 09 (Deposition) - 24 Mar 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Structural Genomics, Oorc Subunit Of 2-Oxoglutarate:Acceptor Oxidoreductase, Oorc, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   U. A. Ramagopal, R. Toro, S. Miller, M. Gilmore, S. K. Burley, S. C. Almo
Structure Of Putative Oorc Subunit Of 2-Oxoglutarate:Acceptor Oxidoreductase From Campylobacter Jejuni
To Be Published
PubMed: search

Compounds

Molecule 1
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BC-PSGX4(BC)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CJ0538, OORC
	Organism Scientific	:	CAMPYLOBACTER JEJUNI
	Organism Taxid	:	197

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:184
 aligned with Q0PAX8_CAMJE | Q0PAX8 from UniProtKB/TrEMBL  Length:185

    Alignment length:186
                             1                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179      
         Q0PAX8_CAMJE     - -MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPHS 185
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee.--.hhhhhhhhhhhhhhhh..eeeeeeeee.......eeeeeeee.............eeeeee.hhhhhhhhh..eeeeeeeee.........hhhhhheeee.hhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3g2e A   0 SLKYQLRFGGE--QGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPHE 185
                                     9|  |    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179      
                                     10 13

Chain B from PDB  Type:PROTEIN  Length:185
 aligned with Q0PAX8_CAMJE | Q0PAX8 from UniProtKB/TrEMBL  Length:185

    Alignment length:185
                             1                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179     
         Q0PAX8_CAMJE     - -MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPH 184
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......hhhhhhhhhhhhhh..eeeeeeeee.......eeeeeeee.............eeeeee.hhhhhhhhh..eeeeeeeee.........hhhhhheeee.hhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g2e B   0 SLKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPH 184
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179

Chain C from PDB  Type:PROTEIN  Length:181
 aligned with Q0PAX8_CAMJE | Q0PAX8 from UniProtKB/TrEMBL  Length:185

    Alignment length:184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    
         Q0PAX8_CAMJE     1 MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPH 184
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.---hhhhhhhhhhhhhhhh..eeeeeeeee.......eeeeeeee.............eeeeee.hhhhhhhhh..eeeeeeeee.........hhhhhheeee.hhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g2e C   1 LKYQLRFGGE---GVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPH 184
                                    10   |    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    
                                    10  14

Chain D from PDB  Type:PROTEIN  Length:185
 aligned with Q0PAX8_CAMJE | Q0PAX8 from UniProtKB/TrEMBL  Length:185

    Alignment length:185
                             1                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179     
         Q0PAX8_CAMJE     - -MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPH 184
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...hhhhhhhhhhhhhhhh..eeeeeeeee......eeeeeeeee.............eeeeee.hhhhhhhhh..eeeeeeeee.........hhhhhheeee.hhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g2e D   0 SLKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVRGGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHPESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVPAKTRDANAKAFDLGVKYATQAKPH 184
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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