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(-) Description

Title :  CRYSTAL STRUCTURE FROM THE MOBILE METAGENOME OF COLE HARBOUR SALT MARSH: INTEGRON CASSETTE PROTEIN HFX_CASS3
 
Authors :  V. Sureshan, C. N. Deshpande, S. J. Harrop, M. Kudritska, J. E. Koenig, E. Evdokimova, J. Osipiuk, A. M. Edwards, A. Savchenko, A. Joachimiak W. F. Doolittle, H. W. Stokes, P. M. G. Curmi, B. C. Mabbutt, Midwest Center For Structural Genomics (Mcsg)
Date :  22 Jan 09  (Deposition) - 10 Feb 09  (Release) - 10 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Integron Cassette Protein, Mobile Metagenome, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Sureshan, C. Deshpande, S. J. Harrop, M. Kudritska, J. E. Koenig, E. Evdokimova, J. Osipiuk, A. M. Edwards, A. Savchenko, A. Joachimiak, W. F. Doolittle, H. W. Stokes, P. M. G. Curmi, B. C. Mabbutt
Structure From The Mobile Metagenome Of Cole Harbour Salt Marsh: Integron Cassette Protein Hfx_cass3
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INTEGRON GENE CASSETTE PROTEIN HFX_CASS3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ORF1
    Organism Scientific: UNCULTURED BACTERIUM
    Organism Taxid: 77133

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MG1Ligand/IonMAGNESIUM ION
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:84 , HOH A:233 , HOH A:234 , HOH A:235 , HOH A:237 , HOH A:239BINDING SITE FOR RESIDUE MG A 201
2AC2SOFTWAREARG A:92 , GLY A:93 , GLY A:97 , HOH A:158 , HOH A:227BINDING SITE FOR RESIDUE ACT A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FYN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FYN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FYN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FYN)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with B0BFQ1_9BACT | B0BFQ1 from UniProtKB/TrEMBL  Length:155

    Alignment length:160
                                  1                                                                                                                                                         
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154
         B0BFQ1_9BACT     - ------MSPQVRTAHIGDVPVLVRLMSEFYQEAGFALPHDAAIRAFKALLGKPDLGRIWLIAEGTESVGYIVLTLGFSMEYGGLRGFVDDFFVRPNARGKGLGAAALQTVKQGCCDLGVRALLVETGPEDHPARGVYSRAGFEESGRMLLGQALAPPIHE 154
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3fynA00 A:-5-154  [code=3.40.630.30, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.eee.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeeeee....eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....ee...--------hhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fyn A  -5 NLYFQGLSPQVRTAHIGDVPVLVRLmSEFYQEAGFALPHDAAIRAFKALLGKPDLGRIWLIAEGTESVGYIVLTLGFSmEYGGLRGFVDDFFVRPNARGKGLGAAALQTVKQGCCDLGVRALLVET--------GVYSRAGFEESGRmLLGQALAPPIHE 154
                                     4        14     |  24        34        44        54        64        74        84        94       104       114     |   -    |  134       144       154
                                                    20-MSE                                               73-MSE                                        120      129          142-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FYN)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FYN)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (B0BFQ1_9BACT | B0BFQ1)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.

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