3FVQ - JenaLib

Title :   CRYSTAL STRUCTURE OF THE NUCLEOTIDE BINDING DOMAIN FBPC COMPLEXED WITH ATP

Authors :   S. Newstead, P. Bilton, E. P. Carpenter, D. Campopiano, S. Iwata

Date :   16 Jan 09 (Deposition) - 25 Aug 09 (Release) - 17 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B

Keywords :   Nucleotide Binding Domain, Abc Motor Domain, Ferric Iron Transport, Atp-Binding, Cell Inner Membrane, Cell Membrane, Hydrolase, Ion Transport, Iron, Iron Transport, Membrane, Nucleotide-Binding, Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Newstead, P. W. Fowler, P. Bilton, E. P. Carpenter, P. J. Sadler, D. J. Campopiano, M. S. Sansom, S. Iwata
Insights Into How Nucleotide-Binding Domains Power Abc Transport.
Structure V. 17 1213 2009
PubMed-ID: 19748342 | Reference-DOI: 10.1016/J.STR.2009.07.009

Compounds

Molecule 1 - FE(3+) IONS IMPORT ATP-BINDING PROTEIN FBPC
	Chains	:	A, B
	EC Number	:	3.6.3.30
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FBPC, NGO0215
	Organism Scientific	:	NEISSERIA GONORRHOEAE
	Organism Taxid	:	242231

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:14 , THR A:17 , VAL A:19 , SER A:39 , GLY A:40 , CYS A:41 , GLY A:42 , LYS A:43 , THR A:44 , THR A:45 , GLN A:87 , CA A:360 , HOH A:368 , HOH A:385 , HOH A:391 , HOH A:399 , HOH A:428 , ARG B:134 , GLU B:138 , SER B:140 , GLY B:141 , GLY B:142 , GLN B:143 , HOH B:416	BINDING SITE FOR RESIDUE ATP A 401
2	AC2	SOFTWARE	THR A:44 , GLN A:87 , HOH A:367 , HOH A:385 , ATP A:401	BINDING SITE FOR RESIDUE CA A 360
3	AC3	SOFTWARE	HIS B:288	BINDING SITE FOR RESIDUE CA A 361
4	AC4	SOFTWARE	ARG A:134 , GLU A:138 , SER A:140 , GLY A:141 , GLY A:142 , GLN A:143 , HOH A:421 , PHE B:14 , GLN B:15 , THR B:17 , VAL B:19 , SER B:39 , GLY B:40 , CYS B:41 , GLY B:42 , LYS B:43 , THR B:44 , THR B:45 , GLN B:87 , CA B:361 , HOH B:408 , HOH B:415 , HOH B:475 , HOH B:487 , HOH B:551 , HOH B:583 , HOH B:640	BINDING SITE FOR RESIDUE ATP B 360
5	AC5	SOFTWARE	THR B:44 , GLN B:87 , ATP B:360 , HOH B:372 , HOH B:408	BINDING SITE FOR RESIDUE CA B 361

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ABC_TRANSPORTER_1	PS00211	ABC transporters family signature.	FBPC_NEIG1	139-153	2	A:139-153 B:139-153

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:343
 aligned with FBPC_NEIG1 | Q5FA19 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:348
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341        
           FBPC_NEIG1     2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRVALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCRLGRLPVQSGAPAGTRGTLLIRPEQFSLHPHSAPAASIHAVVLKTTPKARHTEISLRAGQTVLTLNLPSAPTLSDGISAVLHLDGPALFFPG 349
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee....eeeeee....hhhhhhhhhh......eeeeee..eeee......hhhhh..eee..........hhhhhhhh........hhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhhh..eeeeeee....eeee..eeeeee.......eeeeeehhh.eeee......eeeeeeeeeeee....eeeeeee..eeeeeee-----.....eeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fvq A   2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCRLGRLPVQSGAPAGTRGTLLIRPEQYSLHPHSAPAASIHAVVLKTTPKARHTEISLRAGQTVLTLNL-----LSDGISAVLHLDGPALFFPG 349
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  |    331       341        
                                                                                                                                                                                                                                                                                                                                                            324   330

Chain B from PDB  Type:PROTEIN  Length:350
 aligned with FBPC_NEIG1 | Q5FA19 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:350
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351
           FBPC_NEIG1     2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRVALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCRLGRLPVQSGAPAGTRGTLLIRPEQFSLHPHSAPAASIHAVVLKTTPKARHTEISLRAGQTVLTLNLPSAPTLSDGISAVLHLDGPALFFPGNT 351
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee....eeeeee....hhhhhhhhhh......eeeeee..eeeee..ee.hhhhh..eee..........hhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhhh..eeeeeee....eeee..eeeeee.......eeeeeehhh.eeee......eeeeeeeeeeee....eeeeeee..eeeeeee..........eeeeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fvq B   2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCRLGRLPVQSGAPAGTRGTLLIRPEQYSLHPHSAPAASIHAVVLKTTPKARHTEISLRAGQTVLTLNLPSAPTLSDGISAVLHLDGPALFFPGNT 351
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (12, 12)

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