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(-) Description

Title :  CRYSTAL STRUCTURE OF POLLEN ALLERGEN PHL P 3
 
Authors :  W. Keller, S. C. Devanaboyina
Date :  12 Jan 09  (Deposition) - 12 Jan 10  (Release) - 12 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Beta-Barrel, Allergen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Keller, S. C. Devanaboyina
Crystal Structure Of Pollen Allergen Phl P 3
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHL P 3 ALLERGEN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: TIMOTHY
    Organism Scientific: PHLEUM PRATENSE
    Organism Taxid: 15957

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1CL10Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:25 , PHE A:100BINDING SITE FOR RESIDUE CL A 201
02AC2SOFTWAREALA A:1 , PHE A:100 , HOH A:163BINDING SITE FOR RESIDUE CL A 202
03AC3SOFTWARELYS A:91 , TYR A:93 , HOH A:560BINDING SITE FOR RESIDUE CL A 585
04AC4SOFTWAREARG B:25 , PHE B:100 , HOH B:134BINDING SITE FOR RESIDUE CL B 201
05AC5SOFTWAREALA B:1 , GLU B:99 , PHE B:100BINDING SITE FOR RESIDUE CL B 202
06AC6SOFTWARELYS B:91 , TYR B:93 , HOH B:533BINDING SITE FOR RESIDUE CL B 588
07AC7SOFTWAREARG C:25 , HOH C:583BINDING SITE FOR RESIDUE CL C 201
08AC8SOFTWARELYS C:91 , TYR C:93BINDING SITE FOR RESIDUE CL C 587
09AC9SOFTWAREARG D:25 , HOH D:576BINDING SITE FOR RESIDUE CL D 201
10BC1SOFTWARELYS D:91 , TYR D:93 , HOH D:540BINDING SITE FOR RESIDUE CL D 586

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FT1)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:63 -Pro A:64
2Gly B:63 -Pro B:64
3Gly C:63 -Pro C:64
4Gly D:63 -Pro D:64

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FT1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FT1)

(-) Exons   (0, 0)

(no "Exon" information available for 3FT1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
 aligned with Q69B42_PHLPR | Q69B42 from UniProtKB/TrEMBL  Length:97

    Alignment length:100
                                                                                                                           97   
                                    10        20        30        40        50        60        70        80        90      |  -
         Q69B42_PHLPR     1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEE---   -
               SCOP domains d3ft1a_ A: automated matches                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeeeeee.....eeeeeee.......ee.eee..eeeee........eeeeeee....eeeeeeee........ee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3ft1 A   1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEEQEF 100
                                    10        20        30        40        50        60        70        80        90       100


Chain B from PDB  Type:PROTEIN  Length:100
 aligned with Q69B42_PHLPR | Q69B42 from UniProtKB/TrEMBL  Length:97

    Alignment length:100
                                                                                                                           97   
                                    10        20        30        40        50        60        70        80        90      |  -
         Q69B42_PHLPR     1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEE---   -
               SCOP domains d3ft1b_ B: automated matches                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeeeeee.....eeeeeee.......ee.eee..eeeee........eeeeeee....eeeeeeee........ee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3ft1 B   1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEEQEF 100
                                    10        20        30        40        50        60        70        80        90       100


Chain C from PDB  Type:PROTEIN  Length:99
 aligned with Q69B42_PHLPR | Q69B42 from UniProtKB/TrEMBL  Length:97

    Alignment length:99
                                                                                                                           97  
                                    10        20        30        40        50        60        70        80        90      |  
         Q69B42_PHLPR     1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEE--   -
               SCOP domains d3ft1c_ C: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeeeeee.....eeeeeee.......ee.eee..eeeee........eeeeeee....eeeeeeee........ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 3ft1 C   1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEEQE  99
                                    10        20        30        40        50        60        70        80        90         


Chain D from PDB  Type:PROTEIN  Length:99
 aligned with Q69B42_PHLPR | Q69B42 from UniProtKB/TrEMBL  Length:97

    Alignment length:99
                                                                                                                           97  
                                    10        20        30        40        50        60        70        80        90      |  
         Q69B42_PHLPR     1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEE--   -
               SCOP domains d3ft1d_ D: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeeeeee.....eeeeeee.......ee.eee..eeeee........eeeeeee....eeeeeeee........ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 3ft1 D   1 AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKKGNVWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEEQE  99
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FT1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FT1)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q69B42_PHLPR | Q69B42)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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        Q69B42_PHLPR | Q69B42: 2jnz 3ft9

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