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(-) Description

Title :  THE 2.25 A CRYSTAL STRUCTURE OF LIPL32, THE MAJOR SURFACE ANTIGEN OF LEPTOSPIRA INTERROGANS SEROVAR COPENHAGENI
 
Authors :  C. S. Farah, C. R. Guzzo, P. Hauk, P. L. Ho
Date :  08 Jan 09  (Deposition) - 16 Jun 09  (Release) - 21 Jul 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Core Jelly-Roll Fold, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Hauk, C. R. Guzzo, H. Roman Ramos, P. L. Ho, C. S. Farah
Structure And Calcium-Binding Activity Of Lipl32, The Major Surface Antigen Of Pathogenic Leptospira Sp.
J. Mol. Biol. V. 390 722 2009
PubMed-ID: 19477185  |  Reference-DOI: 10.1016/J.JMB.2009.05.034
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LIPL32
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAE
    Expression System Strain: BL21(SI)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LIC11352, LIC_11352, LIPL32
    Organism Scientific: LEPTOSPIRA INTERROGANS SEROVAR COPENHAGENI
    Organism Taxid: 44275
    Strain: STR. FIOCRUZ L1-130

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
12111Ligand/Ion2,2',2''-NITRILOTRIETHANOL
2CL1Ligand/IonCHLORIDE ION
3MSE10Mod. Amino AcidSELENOMETHIONINE
4OXL2Ligand/IonOXALATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:74 , LYS A:77 , TYR A:217 , LYS A:218 , HOH A:287 , HOH A:294 , HOH A:309 , HOH A:363 , HOH A:420 , HOH A:421BINDING SITE FOR RESIDUE 211 A 1
2AC2SOFTWARETYR A:59 , GLY A:61 , TYR A:62 , SER A:114 , PHE A:226 , SER A:247BINDING SITE FOR RESIDUE OXL A 273
3AC3SOFTWAREHOH A:431 , HOH A:432BINDING SITE FOR RESIDUE CL A 274
4AC4SOFTWARETYR B:59 , GLY B:61 , TYR B:62 , GLN B:67 , SER B:114 , ALA B:116 , SER B:247BINDING SITE FOR RESIDUE OXL B 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FRL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:99 -Pro A:100
2Lys A:218 -Pro A:219
3Ser B:99 -Pro B:100
4Lys B:218 -Pro B:219

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FRL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FRL)

(-) Exons   (0, 0)

(no "Exon" information available for 3FRL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with Q72SM7_LEPIC | Q72SM7 from UniProtKB/TrEMBL  Length:272

    Alignment length:241
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263 
         Q72SM7_LEPIC    24 GGLPSLKSSFVLSEDTIPGTNETVKTLLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGEIGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLK 264
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee.------.eeeeee..eeeeeeeee.......eee...eeeeeeeeee.....eeeeeee............eeehhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhh.....----......eeee.......eeeee......hhhhhhhh........eeeeeeeee.......eeeeeeeeee..........eee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3frl A  24 GGLPSLKSSFVLSEDT------TVKTLLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEmGVRmISPTGEIGEPGDGDLVSDAFKAATPEEKSmPHWFDTWIRVERmSAImPDQIAKAAKAKPVQK----DDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLK 264
                                    33     |   -  |     53        63        73        83        93   |   103       113       123   |   133      |143|      153     |   -|      173       183       193       203       213       223       233       243       253       263 
                                          39     46                                             93-MSE                           127-MSE      140-MSE            159  164                                                                                                    
                                                                                                    97-MSE                                        144-MSE                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:232
 aligned with Q72SM7_LEPIC | Q72SM7 from UniProtKB/TrEMBL  Length:272

    Alignment length:238
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254        
         Q72SM7_LEPIC    25 GLPSLKSSFVLSEDTIPGTNETVKTLLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGEIGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEES 262
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee........eeeeee..eeeeeeeee.......eee...eeeeeeeeee.....eeeeeee............eeehhhhhhhhhhhhh.......eeeeee....hhhhhhhhhhh....------.....eeee.......eeeee......hhhhhhh.hhhhh...eeeeeeee........eeeeeeeeee..........eee.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3frl B  25 GLPSLKSSFVLSEDTIPGTNETVKTLLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEmGVRmISPTGEIGEPGDGDLVSDAFKAATPEEKSmPHWFDTWIRVERmSAImPDQIAKAAKAKPVQ------DGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEES 262
                                    34        44        54        64        74        84        94  |    104       114       124  |    134     | 144       154   |     -|      174       184       194       204       214       224       234       244       254        
                                                                                               93-MSE                           127-MSE      140-MSE           158    165                                                                                                 
                                                                                                   97-MSE                                        144-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FRL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FRL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FRL)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3FRL)

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