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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HUMAN START DOMAIN OF ACYL-COENZYME A THIOESTERASE 11 (ACOT11)

Authors :   M. I. Siponen, L. Lehtio, C. H. Arrowsmith, H. Berglund, C. Bountra, R. C L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Ham A. Johansson, I. Johansson, T. Karlberg, T. Kotenyova, M. Moche, M. E. P. Nordlund, T. Nyman, C. Persson, J. Sagemark, A. G. Thorsell, L. Tres S. Van-Den-Berg, J. Weigelt, M. Welin, M. Wikstrom, M. Wisniewska, H. Structural Genomics Consortium (Sgc)

Date :   27 Dec 08 (Deposition) - 24 Feb 09 (Release) - 21 Sep 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Orthogonal Bundle, Consortium, Lipid Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. G. Thorsell, W. H. Lee, C. Persson, M. I. Siponen, M. Nilsson, R. D. Busam, T. Kotenyova, H. Schuler, L. Lehtio
Comparative Structural Analysis Of Lipid Binding Start Domains.
Plos One V. 6 19521 2011
PubMed-ID: 21738568 | Reference-DOI: 10.1371/JOURNAL.PONE.0019521

Molecule 1 - THIOESTERASE, ADIPOSE ASSOCIATED, ISOFORM BFIT2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	LEX
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	STARTDOMAIN, UNP RESIDUES 339-594
	Gene	:	ACOT11, HCG_33028, RP11-240D10.1-002
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ACYL-COA THIOESTERASE 11, ACYL-COA THIOESTERASE 11, ISOFORM CRA_B

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 5)

No.	Name	Count	Type	Full Name
1	1PE	2	Ligand/Ion	PENTAETHYLENE GLYCOL
2	CL	1	Ligand/Ion	CHLORIDE ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	TCE	1	Ligand/Ion	3,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:449 , TYR A:456 , LEU A:508 , TYR A:546 , PHE A:569	BINDING SITE FOR RESIDUE 1PE A 2
2	AC2	SOFTWARE	HIS A:482 , THR A:483 , LYS A:484 , ARG A:523	BINDING SITE FOR RESIDUE CL A 1
3	AC3	SOFTWARE	PHE A:423 , LEU A:424 , ASN A:548 , ALA A:550 , THR A:551 , LEU A:555 , VAL A:558	BINDING SITE FOR RESIDUE GOL A 595
4	AC4	SOFTWARE	HOH A:31 , HOH A:207 , SER A:353 , LYS A:356 , SER A:407 , ALA A:563 , ASN B:585	BINDING SITE FOR RESIDUE TCE A 596
5	AC5	SOFTWARE	ARG B:449 , TYR B:456 , PHE B:488 , LEU B:508 , THR B:527 , TYR B:546 , ASN B:548 , PHE B:573	BINDING SITE FOR RESIDUE 1PE B 1

(no "SS Bond" information available for 3FO5)

(no "Cis Peptide Bond" information available for 3FO5)

Asymmetric/Biological Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_048191	R	536	H	ACO11_HUMAN	Polymorphism	12403630	A/B	R	536	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	START	PS50848	START domain profile.	ACO11_HUMAN	401-547	2	A:401-543 B:401-543

(no "Exon" information available for 3FO5)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:239
 aligned with ACO11_HUMAN | Q8WXI4 from UniProtKB/Swiss-Prot  Length:607

    Alignment length:255
                                   355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595     
          ACO11_HUMAN   346 ERRYREASARKKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDDKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKCCWVRVSLTELVSASGFYSWGLESRSKGRRSDGWNGKLAGGHLSTLKAIPVAKINSR 600
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh...........eee.hhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeeeee....eeeeeeeee..hhhhhhhhhhhhhhhhhh.....eeeeeeeee..eeeeeeee.........eeeeeeeeee........eeeeeeeee..........ee.....eeeeeeeee..eeeeeeee.------.hhhhhhh-hhhhhh.---------..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------START  PDB: A:401-543 UniProt: 401-547                                                                                                             ----------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fo5 A 346 ERRYREASARKKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDDKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQ------ATPGVLNY-VTTNVAG---------LSSEFYTTFKACEQFLLDNR 584
                                   355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545   |     -|      558     |   -     | 569       579     
                                                                                                                                                                                                                                     549    550    557 |   564       565                   
                                                                                                                                                                                                                                                     558

Chain B from PDB  Type:PROTEIN  Length:233
 aligned with ACO11_HUMAN | Q8WXI4 from UniProtKB/Swiss-Prot  Length:607

    Alignment length:257
                                                                                                                                                                                                                                                                                         607 
                                   361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601     | 
          ACO11_HUMAN   352 ASARKKIRLDRKYIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDDKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKCCWVRVSLTELVSASGFYSWGLESRSKGRRSDGWNGKLAGGHLSTLKAIPVAKINSRFGYLQDT-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.--------..ee.hhhhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeeee....eeeeeeeee..hhhhhhhhhhhhhhhhhh.....eeeeeeeee..eeeeeeee.........eeeeeeeeee........eeeeeeeee..........ee.....eeeeeeeee..eeeeeeee.------.hhhhhhh-hhhhhh.---------..hhhhhhhhhhhhhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------START  PDB: B:401-543 UniProt: 401-547                                                                                                             ------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fo5 B 352 ASARKKIRLDRKYIV--------LSVPWDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDDKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDEDDAIYHVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQ------ATPGVLNY-VTTNVAG---------LSSEFYTTFKACEQFLLDNRNDLAPSLQ 592
                                   361    |    -   |   381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       | -    |  555 | |   564       565       575       585       
                                        366      375                                                                                                                                                                           549    550    557 |   564       565                           
                                                                                                                                                                                                                                               558

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3FO5)

(no "CATH Domain" information available for 3FO5)

(no "Pfam Domain" information available for 3FO5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (ACO11_HUMAN | Q8WXI4)

molecular function
	GO:0047617	acyl-CoA hydrolase activity	Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate.
	GO:0052689	carboxylic ester hydrolase activity	Catalysis of the hydrolysis of a carboxylic ester bond.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
biological process
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0035556	intracellular signal transduction	The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
	GO:0035338	long-chain fatty-acyl-CoA biosynthetic process	The chemical reactions and pathways resulting in the formation of a long-chain fatty-acyl-CoA any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. Long-chain fatty-acyl-CoAs have chain lengths of C13 or more.
	GO:0009409	response to cold	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
	GO:0009266	response to temperature stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 3fo5)

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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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