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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ACETYLTRANSFERASE FROM LISTERIA INNOCUA
 
Authors :  M. E. Cuff, C. Tesar, L. Freeman, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  24 Dec 08  (Deposition) - 27 Jan 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Gnat, Rimi, Acetyltransferase, Listeria Innocua, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, C. Tesar, L. Freeman, A. Joachimiak
The Structure Of A Putative Acetyltransferase From Listeria Innocua.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ACETYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-160
    Gene: LIN0611
    Organism Scientific: LISTERIA INNOCUA
    Organism Taxid: 272626
    Strain: CLIP11262
    Synonym: PROTEIN LIN0611

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2MLI3Ligand/IonMALONATE ION
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2MLI3Ligand/IonMALONATE ION
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 18)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2MLI3Ligand/IonMALONATE ION
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:40 , TYR A:45 , ALA A:85 , TYR A:88 , EDO A:166 , EDO A:167 , HOH A:360BINDING SITE FOR RESIDUE MLI A 161
02AC2SOFTWAREGLN A:95 , ARG A:96 , GLY A:97 , LEU A:98 , GLY A:99 , THR A:100 , PHE A:130 , EDO A:165 , HOH A:179 , HOH A:279 , HOH A:298BINDING SITE FOR RESIDUE MLI A 162
03AC3SOFTWARELYS A:7 , ALA A:8 , ILE A:54 , THR A:57 , PRO A:58 , PHE A:59 , PHE A:110BINDING SITE FOR RESIDUE EDO A 163
04AC4SOFTWAREPRO A:91 , GLU A:92 , THR A:94 , ARG A:96BINDING SITE FOR RESIDUE EDO A 164
05AC5SOFTWARELEU A:89 , THR A:94 , GLN A:95 , THR A:126 , MLI A:162BINDING SITE FOR RESIDUE EDO A 165
06AC6SOFTWARETYR A:28 , ASN A:119 , GLU A:121 , GLU A:144 , MLI A:161 , EDO A:167 , HOH A:411BINDING SITE FOR RESIDUE EDO A 166
07AC7SOFTWARELEU A:84 , ALA A:85 , ALA A:86 , PHE A:87 , ASN A:119 , MLI A:161 , EDO A:166 , HOH A:212BINDING SITE FOR RESIDUE EDO A 167
08AC8SOFTWAREASP A:38 , LEU A:41 , LYS A:42 , HOH A:222 , HOH A:233BINDING SITE FOR RESIDUE EDO A 168
09AC9SOFTWARELEU B:84 , ALA B:85 , ALA B:86 , PHE B:87 , TYR B:88 , ASN B:119 , HOH B:188BINDING SITE FOR RESIDUE EDO B 161
10BC1SOFTWAREGLN B:95 , ARG B:96 , GLY B:97 , LEU B:98 , GLY B:99 , THR B:100 , PHE B:130 , EDO B:163 , HOH B:217BINDING SITE FOR RESIDUE MLI B 162
11BC2SOFTWARELEU B:89 , THR B:94 , GLN B:95 , THR B:126 , PHE B:130 , MLI B:162BINDING SITE FOR RESIDUE EDO B 163
12BC3SOFTWAREPRO B:91 , GLU B:92 , THR B:94 , ARG B:96BINDING SITE FOR RESIDUE EDO B 164

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FNC)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:114 -Pro A:115
2Leu B:114 -Pro B:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FNC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FNC)

(-) Exons   (0, 0)

(no "Exon" information available for 3FNC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with Q92E50_LISIN | Q92E50 from UniProtKB/TrEMBL  Length:166

    Alignment length:160
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
         Q92E50_LISIN     1 MDFHIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH 160
               SCOP domains d3fnca_ A: automated matches                                                                                                                                     SCOP domains
               CATH domains -3fncA00 A:2-160  [code=3.40.630.30, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeeeeeeeee..eeeeeeeee.hhhh..hhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fnc A   1 mDFHIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGmTLFHVPLPmFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH 160
                            |       10        20        30        40        50        60        70        80        90       100      |110     | 120       130       140       150       160
                            |                                                                                                       107-MSE  116-MSE                                        
                            1-MSE                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:161
 aligned with Q92E50_LISIN | Q92E50 from UniProtKB/TrEMBL  Length:166

    Alignment length:161
                             1                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159 
         Q92E50_LISIN     - -MDFHIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH 160
               SCOP domains d3fncb_ B: automated matches                                                                                                                                      SCOP domains
               CATH domains 3fncB00 B:0-160  [code=3.40.630.30, no name defined]                                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeeeeeeee...eeeeeeeee.hhhh..hhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fnc B   0 AmDFHIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGmTLFHVPLPmFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH 160
                             |       9        19        29        39        49        59        69        79        89        99       109      |119       129       139       149       159 
                             1-MSE                                                                                                   107-MSE  116-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FNC)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q92E50_LISIN | Q92E50)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.

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