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(-) Description

Title :  CRYSTAL STRUCTURE OF TARTRATE DEHYDROGENASE FROM PSEUDOMONAS PUTIDA IN COMPLEX WITH NADH, OXALATE AND METAL ION
 
Authors :  R. Malik, R. E. Viola
Date :  18 Dec 08  (Deposition) - 22 Dec 09  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Lyase, Magnesium, Manganese, Nad, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Malik, R. E. Viola
Structural Characterization Of Tartrate Dehydrogenase: A Versatile Enzyme Catalyzing Multiple Reactions.
Acta Crystallogr. , Sect. D V. 66 673 2010
PubMed-ID: 20516620  |  Reference-DOI: 10.1107/S0907444910008851

(-) Compounds

Molecule 1 - TARTRATE DEHYDROGENASE/DECARBOXYLASE
    Chains: A, B, C, D
    EC Number: 1.1.1.93
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-3A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
    Strain: ATCC 17642
    Synonym: TDH, D-MALATE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 73)

Asymmetric Unit (7, 73)
No.NameCountTypeFull Name
1DTT3Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2MG4Ligand/IonMAGNESIUM ION
3MSE40Mod. Amino AcidSELENOMETHIONINE
4NAI4Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
5NH44Ligand/IonAMMONIUM ION
6OXL4Ligand/IonOXALATE ION
7SO414Ligand/IonSULFATE ION
Biological Unit 1 (6, 34)
No.NameCountTypeFull Name
1DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2MG-1Ligand/IonMAGNESIUM ION
3MSE20Mod. Amino AcidSELENOMETHIONINE
4NAI2Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
5NH42Ligand/IonAMMONIUM ION
6OXL2Ligand/IonOXALATE ION
7SO47Ligand/IonSULFATE ION
Biological Unit 2 (6, 35)
No.NameCountTypeFull Name
1DTT2Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2MG-1Ligand/IonMAGNESIUM ION
3MSE20Mod. Amino AcidSELENOMETHIONINE
4NAI2Ligand/Ion1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
5NH42Ligand/IonAMMONIUM ION
6OXL2Ligand/IonOXALATE ION
7SO47Ligand/IonSULFATE ION

(-) Sites  (33, 33)

Asymmetric Unit (33, 33)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:250 , OXL A:403 , HOH A:665 , HOH A:666 , ASP B:225BINDING SITE FOR RESIDUE MG A 401
02AC2SOFTWAREILE A:16 , PHE A:75 , ALA A:77 , VAL A:78 , GLY A:79 , PRO A:81 , ASP A:86 , LEU A:94 , ILE A:263 , GLU A:282 , HIS A:285 , GLY A:286 , SER A:287 , ALA A:288 , ILE A:291 , ASN A:298 , OXL A:403 , NH4 A:404 , HOH A:505 , HOH A:517 , HOH A:520 , HOH A:531 , HOH A:548 , HOH A:619 , HOH A:631 , HOH A:667 , HOH A:668 , HOH A:669 , HOH A:671 , ASN B:194 , HIS B:223 , ILE B:226 , ARG B:230BINDING SITE FOR RESIDUE NAI A 402
03AC3SOFTWAREARG A:98 , ARG A:108 , ARG A:134 , ASP A:250 , MG A:401 , NAI A:402 , HOH A:600 , LYS B:192 , ASP B:225BINDING SITE FOR RESIDUE OXL A 403
04AC4SOFTWAREGLY A:76 , GLU A:282 , PRO A:283 , HIS A:285 , NAI A:402BINDING SITE FOR RESIDUE NH4 A 404
05AC5SOFTWAREASP A:225 , ASP B:250 , OXL B:402 , HOH B:659 , HOH B:660BINDING SITE FOR RESIDUE MG A 405
06AC6SOFTWAREARG A:111 , TRP A:304 , LEU A:308 , HIS A:324 , LEU A:328 , HOH A:721BINDING SITE FOR RESIDUE SO4 A 406
07AC7SOFTWAREGLN A:234 , ARG A:237 , ARG C:7BINDING SITE FOR RESIDUE SO4 A 407
08AC8SOFTWARELYS A:57 , PRO A:60 , ASP A:61 , ASP A:62 , HOH A:693BINDING SITE FOR RESIDUE SO4 A 408
09AC9SOFTWAREARG A:182 , GLU A:183 , HOH A:547BINDING SITE FOR RESIDUE SO4 A 409
10BC1SOFTWAREASN A:194 , HIS A:223 , ILE A:226 , ARG A:230 , ILE B:16 , ALA B:77 , VAL B:78 , GLY B:79 , PRO B:81 , ASP B:86 , LEU B:94 , ILE B:263 , GLU B:282 , HIS B:285 , GLY B:286 , SER B:287 , ALA B:288 , ASP B:290 , ILE B:291 , ALA B:297 , ASN B:298 , OXL B:402 , NH4 B:403 , HOH B:509 , HOH B:555 , HOH B:562 , HOH B:580 , HOH B:620 , HOH B:661 , HOH B:665 , HOH B:667 , HOH B:669 , HOH B:679BINDING SITE FOR RESIDUE NAI B 401
11BC2SOFTWARELYS A:192 , ASP A:225 , MG A:405 , ARG B:98 , ARG B:108 , ARG B:134 , ASP B:250 , NAI B:401 , HOH B:659 , HOH B:662 , HOH B:702BINDING SITE FOR RESIDUE OXL B 402
12BC3SOFTWAREGLY B:76 , GLU B:282 , PRO B:283 , HIS B:285 , NAI B:401BINDING SITE FOR RESIDUE NH4 B 403
13BC4SOFTWAREARG B:111 , TRP B:304 , LEU B:308 , HIS B:324 , LEU B:328 , HOH B:644BINDING SITE FOR RESIDUE SO4 B 404
14BC5SOFTWARETHR B:152 , GLU B:153 , PRO B:215 , HOH B:673BINDING SITE FOR RESIDUE SO4 B 405
15BC6SOFTWAREGLN B:234 , ARG B:237 , ARG D:7BINDING SITE FOR RESIDUE SO4 B 406
16BC7SOFTWAREARG B:165 , ARG B:206 , HIS B:213 , HOH B:538BINDING SITE FOR RESIDUE DTT B 407
17BC8SOFTWAREASP C:250 , ASP C:254 , OXL C:403 , HOH C:521 , HOH C:526 , ASP D:225BINDING SITE FOR RESIDUE MG C 401
18BC9SOFTWAREILE C:16 , ALA C:77 , VAL C:78 , GLY C:79 , PRO C:81 , ASP C:86 , LEU C:94 , GLU C:282 , HIS C:285 , GLY C:286 , SER C:287 , ALA C:288 , ASP C:290 , ILE C:291 , ALA C:297 , ASN C:298 , OXL C:403 , NH4 C:404 , HOH C:513 , HOH C:532 , HOH C:551 , HOH C:574 , HOH C:583 , HOH C:588 , HOH C:628 , HOH C:677 , ASN D:194 , HIS D:223 , ILE D:226 , ARG D:230BINDING SITE FOR RESIDUE NAI C 402
19CC1SOFTWAREARG C:98 , ARG C:108 , ARG C:134 , ASP C:250 , MG C:401 , NAI C:402 , HOH C:678 , LYS D:192 , ASP D:225BINDING SITE FOR RESIDUE OXL C 403
20CC2SOFTWAREGLY C:76 , GLU C:282 , PRO C:283 , HIS C:285 , NAI C:402BINDING SITE FOR RESIDUE NH4 C 404
21CC3SOFTWAREASP C:225 , ASP D:250 , OXL D:402 , HOH D:705 , HOH D:706BINDING SITE FOR RESIDUE MG C 405
22CC4SOFTWARETHR C:152 , GLU C:153BINDING SITE FOR RESIDUE SO4 C 406
23CC5SOFTWARELYS C:57 , PRO C:60 , ASP C:61BINDING SITE FOR RESIDUE SO4 C 407
24CC6SOFTWAREARG C:111 , TRP C:304 , LEU C:308 , HIS C:324 , LEU C:328 , HOH C:652BINDING SITE FOR RESIDUE SO4 C 408
25CC7SOFTWAREILE C:226 , LEU C:233 , GLN C:234 , THR D:262 , ILE D:263 , HOH D:685BINDING SITE FOR RESIDUE DTT C 409
26CC8SOFTWAREASN C:194 , HIS C:223 , ILE C:226 , ARG C:230 , HOH C:623 , ILE D:16 , ALA D:77 , VAL D:78 , GLY D:79 , PRO D:81 , ASP D:86 , LEU D:94 , ILE D:263 , GLU D:282 , HIS D:285 , GLY D:286 , SER D:287 , ALA D:288 , ASP D:290 , ILE D:291 , ALA D:297 , ASN D:298 , OXL D:402 , NH4 D:403 , HOH D:512 , HOH D:515 , HOH D:534 , HOH D:594 , HOH D:654 , HOH D:707 , HOH D:708BINDING SITE FOR RESIDUE NAI D 401
27CC9SOFTWARELYS C:192 , ASP C:225 , MG C:405 , HOH C:535 , ARG D:98 , ARG D:108 , ARG D:134 , ASP D:250 , NAI D:401 , HOH D:764BINDING SITE FOR RESIDUE OXL D 402
28DC1SOFTWAREGLY D:76 , GLU D:282 , PRO D:283 , HIS D:285 , NAI D:401BINDING SITE FOR RESIDUE NH4 D 403
29DC2SOFTWARELYS D:57 , PRO D:60 , ASP D:61 , ASP D:62 , HOH D:671 , HOH D:680BINDING SITE FOR RESIDUE SO4 D 404
30DC3SOFTWAREARG D:26 , SER D:358 , HOH D:557 , HOH D:642 , HOH D:675BINDING SITE FOR RESIDUE SO4 D 405
31DC4SOFTWAREARG D:111 , TRP D:304 , LEU D:308 , HIS D:324 , LEU D:328 , HOH D:748BINDING SITE FOR RESIDUE SO4 D 406
32DC5SOFTWAREARG C:165 , ASN D:151 , HOH D:711BINDING SITE FOR RESIDUE SO4 D 407
33DC6SOFTWAREASP D:14 , GLY D:15 , TRP D:80 , PHE D:292 , HOH D:632 , HOH D:668 , HOH D:738BINDING SITE FOR RESIDUE DTT D 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FLK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys D:294 -Asn D:295

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FLK)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IDH_IMDHPS00470 Isocitrate and isopropylmalate dehydrogenases signature.TTUC_PSEPU246-265
 
 
 		  4A:246-265
B:246-265
C:246-265
D:246-265
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IDH_IMDHPS00470 Isocitrate and isopropylmalate dehydrogenases signature.TTUC_PSEPU246-265
 
 
 		  2A:246-265
B:246-265
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IDH_IMDHPS00470 Isocitrate and isopropylmalate dehydrogenases signature.TTUC_PSEPU246-265
 
 
 		  2-
-
C:246-265
D:246-265

(-) Exons   (0, 0)

(no "Exon" information available for 3FLK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
 aligned with TTUC_PSEPU | Q51945 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:360
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364
           TTUC_PSEPU     5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVDWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTLARL 364
               SCOP domains d3flka_ A: automated matches                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3flkA00 A:5-364 Isopropylmalate Dehydrogenase                                                                                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.....hhhhhhh...eeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee.................eeeeeee.........eeee.......eeeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eee-ehhhhhhhhhhhhhhhh......eeeee.......eeeee...............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDH_IMDH            --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3flk A   5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKmmPDDWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGImFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGmAISmPYWDKRTEAmAAHYPHVSWDKQHIDILCARFVLQPERFDVVV-ASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAmIWSGALmLEFLGQGDERYQRAHDDmLNAIERVIADGSVTPDmGGTLSTQQVGAAISDTLARL 364
                                    14        24        34        44        54   ||   64        74        84        94       104       114       124       134       144   |   154       164       174       184       194 |   | 204     | 214       224       234       244       254       264       274       284       294       304    |  314       324  |    334       344       354       364
                                                                                58-MSE                                                                                   148-MSE                                         196-MSE       210-MSE                         242 |                                                       302-MSE  |               327-MSE          344-MSE                
                                                                                 59-MSE                                                                                                                                      200-MSE                                     244                                                              309-MSE                                                   


Chain B from PDB  Type:PROTEIN  Length:359
 aligned with TTUC_PSEPU | Q51945 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:360
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364
           TTUC_PSEPU     5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVDWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTLARL 364
               SCOP domains d3flkb_ B: automated matches                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3flkB00 B:5-364 Isopropylmalate Dehydrogenase                                                                                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.....hhhhhhh...eeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee.................eeeeeee.........eeee.......eeeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eee-ehhhhhhhhhhhhhhhh......eeeee.......eeeee...............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDH_IMDH            --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3flk B   5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKmmPDDWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGImFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGmAISmPYWDKRTEAmAAHYPHVSWDKQHIDILCARFVLQPERFDVVV-ASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAmIWSGALmLEFLGQGDERYQRAHDDmLNAIERVIADGSVTPDmGGTLSTQQVGAAISDTLARL 364
                                    14        24        34        44        54   ||   64        74        84        94       104       114       124       134       144   |   154       164       174       184       194 |   | 204     | 214       224       234       244       254       264       274       284       294       304    |  314       324  |    334       344       354       364
                                                                                58-MSE                                                                                   148-MSE                                         196-MSE       210-MSE                         242 |                                                       302-MSE  |               327-MSE          344-MSE                
                                                                                 59-MSE                                                                                                                                      200-MSE                                     244                                                              309-MSE                                                   


Chain C from PDB  Type:PROTEIN  Length:359
 aligned with TTUC_PSEPU | Q51945 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:360
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364
           TTUC_PSEPU     5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVDWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTLARL 364
               SCOP domains d3flkc_ C: automated matches                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3flkC00 C:5-364 Isopropylmalate Dehydrogenase                                                                                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.....hhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee.................eeeeeee.........eeee.......eeeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eee-ehhhhhhhhhhhhhhhh......eeeee.......eeeee...............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDH_IMDH            --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3flk C   5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKmmPDDWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGImFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGmAISmPYWDKRTEAmAAHYPHVSWDKQHIDILCARFVLQPERFDVVV-ASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAmIWSGALmLEFLGQGDERYQRAHDDmLNAIERVIADGSVTPDmGGTLSTQQVGAAISDTLARL 364
                                    14        24        34        44        54   ||   64        74        84        94       104       114       124       134       144   |   154       164       174       184       194 |   | 204     | 214       224       234       244       254       264       274       284       294       304    |  314       324  |    334       344       354       364
                                                                                58-MSE                                                                                   148-MSE                                         196-MSE       210-MSE                         242 |                                                       302-MSE  |               327-MSE          344-MSE                
                                                                                 59-MSE                                                                                                                                      200-MSE                                     244                                                              309-MSE                                                   


Chain D from PDB  Type:PROTEIN  Length:359
 aligned with TTUC_PSEPU | Q51945 from UniProtKB/Swiss-Prot  Length:365

    Alignment length:360
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364
           TTUC_PSEPU     5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVDWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTLARL 364
               SCOP domains d3flkd_ D: automated matches                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3flkD00 D:5-364 Isopropylmalate Dehydrogenase                                                                                                                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.....hhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee.................eeeeeee.........eeee.......eeeeeeeeehhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhh.eee-ehhhhhhhhhhhhhhhh......eeeee.......eeeee...............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IDH_IMDH            --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3flk D   5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKmmPDDWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGImFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGmAISmPYWDKRTEAmAAHYPHVSWDKQHIDILCARFVLQPERFDVVV-ASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAmIWSGALmLEFLGQGDERYQRAHDDmLNAIERVIADGSVTPDmGGTLSTQQVGAAISDTLARL 364
                                    14        24        34        44        54   ||   64        74        84        94       104       114       124       134       144   |   154       164       174       184       194 |   | 204     | 214       224       234       244       254       264       274       284       294       304    |  314       324  |    334       344       354       364
                                                                                58-MSE                                                                                   148-MSE                                         196-MSE       210-MSE                         242 |                                                       302-MSE  |               327-MSE          344-MSE                
                                                                                 59-MSE                                                                                                                                      200-MSE                                     244                                                              309-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FLK)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (TTUC_PSEPU | Q51945)
molecular function
    GO:0046553    D-malate dehydrogenase (decarboxylating) activity    Catalysis of the reaction: (R)-malate + NAD(+) = CO(2) + NADH + pyruvate.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
    GO:0050319    tartrate decarboxylase activity    Catalysis of the reaction: L-tartrate + H(+) = D-glycerate + CO(2).
    GO:0009027    tartrate dehydrogenase activity    Catalysis of the reaction: tartrate + NAD+ = oxaloglycolate + NADH + H+.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TTUC_PSEPU | Q51945: 3fmx

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3FLK)