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(-) Description

Title :  CRYSTAL STRUCTURE OF NTRC-LIKE TWO-DOMAIN PROTEIN (RER070207001320) FROM EUBACTERIUM RECTALE AT 2.10 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  17 Dec 08  (Deposition) - 06 Jan 09  (Release) - 14 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Rer070207001320, Ntrc-Like Two-Domain Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Xu, B. Christen, H. J. Chiu, L. Jaroszewski, H. E. Klock, M. W. Knuth, M. D. Miller, M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, D. H. Figurski, L. Shapiro, I. A. Wilson
Structure Of The Pilus Assembly Protein Tadz From Eubacterium Rectale: Implications For Polar Localization.
Mol. Microbiol. V. 83 712 2012
PubMed-ID: 22211578  |  Reference-DOI: 10.1111/J.1365-2958.2011.07954.X

(-) Compounds

Molecule 1 - NTRC-LIKE TWO-DOMAIN PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RER070207001320
    Organism Scientific: EUBACTERIUM RECTALE
    Organism Taxid: 39491

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 18)

Asymmetric Unit (7, 18)
No.NameCountTypeFull Name
12PE2Ligand/IonNONAETHYLENE GLYCOL
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CL1Ligand/IonCHLORIDE ION
4GOL2Ligand/IonGLYCEROL
5MG1Ligand/IonMAGNESIUM ION
6MSE10Mod. Amino AcidSELENOMETHIONINE
7SO41Ligand/IonSULFATE ION
Biological Unit 1 (5, 32)
No.NameCountTypeFull Name
12PE4Ligand/IonNONAETHYLENE GLYCOL
2ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CL-1Ligand/IonCHLORIDE ION
4GOL4Ligand/IonGLYCEROL
5MG-1Ligand/IonMAGNESIUM ION
6MSE20Mod. Amino AcidSELENOMETHIONINE
7SO42Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:134 , GLY A:135 , VAL A:136 , GLY A:137 , THR A:138 , SER A:139 , THR A:140 , GLU A:162 , SER A:273 , LEU A:275 , LYS A:279 , ASN A:307 , LYS A:308 , PRO A:329 , ARG A:330 , TYR A:331 , ILE A:339 , GOL A:358 , HOH A:365 , HOH A:372 , HOH A:375 , HOH A:377 , HOH A:387 , HOH A:388 , HOH A:425 , HOH A:435 , MG A:501BINDING SITE FOR RESIDUE ATP A 500
2AC2SOFTWARESER A:139 , GLU A:162 , HOH A:372 , HOH A:388 , ATP A:500BINDING SITE FOR RESIDUE MG A 501
3AC3SOFTWARESER A:310 , ASN A:311 , LYS A:312BINDING SITE FOR RESIDUE CL A 355
4AC4SOFTWAREASP A:16 , ARG A:17 , VAL A:21 , MSE A:152 , LYS A:154 , ASP A:242 , HOH A:480BINDING SITE FOR RESIDUE 2PE A 356
5AC5SOFTWAREASP A:11 , GLU A:56 , GLY A:77 , LYS A:92 , TYR A:93 , MSE A:281 , GLU A:285 , HOH A:391 , HOH A:413BINDING SITE FOR RESIDUE 2PE A 357
6AC6SOFTWARESER A:273 , GLN A:274 , LEU A:275 , ASN A:313 , ALA A:334 , VAL A:336 , ILE A:339 , ATP A:500BINDING SITE FOR RESIDUE GOL A 358
7AC7SOFTWARESER A:310 , ASN A:313 , ARG A:330 , GLU A:332 , HIS A:333BINDING SITE FOR RESIDUE GOL A 359
8AC8SOFTWARELEU A:221 , GLU A:253 , ILE A:254BINDING SITE FOR RESIDUE SO4 A 360

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FKQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FKQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FKQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FKQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3FKQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:354
 aligned with D0VX10_9FIRM | D0VX10 from UniProtKB/TrEMBL  Length:354

    Alignment length:354
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350    
         D0VX10_9FIRM     1 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFNIDKSEFKRNCGLAYFTGTPGIELIKDEIAICKYQRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSKAWRIIVVNDGSQLSNYKFMRAYESVVLLEQNDDINIIRNMNMIYNKFSNKNSEMLSNISIKTIGGAPRYEHATVRQIIEALTKMEFFEEILQ 354
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh..eeeee.....hhhhhh...eeeeee......ee..eeeee...hhhhhhhhhhhhhhhhhhhh..........eeeeee......hhhhhhhhhhhhhhhhh..eeeee.....hhhhhh......hhhhhhhhhhh...hhhhhhhhh.ee.....ee.....hhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhhh......hhh.eeeee................eeeee.......hhhhhhhhhhh..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fkq A   1 mKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFNIDKSEFKRNCGLAYFTGTPGIELIKDEIAICKYQRVDVIFKQILGVYSDmAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANmGKKVFYLNIEQCGTTDVFFQAEGNATmSDVIYSLKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGmDNYDEIIVDLPFSLEIEKLKLLSKAWRIIVVNDGSQLSNYKFmRAYESVVLLEQNDDINIIRNmNmIYNKFSNKNSEmLSNISIKTIGGAPRYEHATVRQIIEALTKmEFFEEILQ 354
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 |     160       170       180       190       200       210       220       230       240       250       260       270       280|      290       300 | |   310     | 320       330       340     | 350    
                            |                                                                                                          110-MSE                                   152-MSE                    179-MSE                                                    238-MSE                                    281-MSE              302-MSE       316-MSE                       346-MSE    
                            1-MSE                                                                                                                                                                                                                                                                                                        304-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FKQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FKQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FKQ)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (D0VX10_9FIRM | D0VX10)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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