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(-) Description

Title :  CRYSTAL STRUCTURE OF A UNCHARACTERIZED PROTEIN LIN1909
 
Authors :  R. Sugadev, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  11 Dec 08  (Deposition) - 13 Jan 09  (Release) - 13 Jan 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  11172J, Uncharacterized Protein, Nysgrc, Psi-Ii, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sugadev, S. K. Burley, S. Swaminathan
Crystal Structure Of A Uncharacterized Protein Lin1909
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LIN1909 PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LIN1909
    Organism Scientific: LISTERIA INNOCUA
    Organism Taxid: 1642

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 35)

Asymmetric/Biological Unit (2, 35)
No.NameCountTypeFull Name
1MN8Ligand/IonMANGANESE (II) ION
2MSE27Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:143 , HIS A:154 , SER A:176 , HIS A:178 , GLU A:201 , HOH A:617BINDING SITE FOR RESIDUE MN A 300
2AC2SOFTWAREHIS B:143 , HIS B:154 , SER B:176 , HIS B:178 , GLU B:201 , HOH B:616BINDING SITE FOR RESIDUE MN B 300
3AC3SOFTWAREHIS C:143 , HIS C:154 , SER C:176 , HIS C:178 , GLU C:201 , HOH C:255BINDING SITE FOR RESIDUE MN C 300
4AC4SOFTWAREHIS D:143 , HIS D:154 , SER D:176 , HIS D:178 , GLU D:201 , HOH D:619BINDING SITE FOR RESIDUE MN D 300
5AC5SOFTWAREHIS E:143 , HIS E:154 , SER E:176 , HIS E:178 , GLU E:201 , HOH E:618BINDING SITE FOR RESIDUE MN E 300
6AC6SOFTWAREHIS F:143 , HIS F:154 , SER F:176 , HIS F:178 , GLU F:201 , HOH F:255BINDING SITE FOR RESIDUE MN F 300
7AC7SOFTWAREHIS G:143 , HIS G:154 , SER G:176 , HIS G:178 , GLU G:201 , HOH G:374BINDING SITE FOR RESIDUE MN G 300
8AC8SOFTWAREHIS H:143 , HIS H:154 , SER H:176 , HIS H:178 , GLU H:201 , HOH H:620BINDING SITE FOR RESIDUE MN H 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FIJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FIJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FIJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FIJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3FIJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.------------------hhhhhhhhhhhh.eeeee...hhhhhhhhhhh..eeee......hhhhhh..........hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhh...ee.hhhhh.................eeeee....hhhhh....eee......ee......eeeeeee....eeeeee......eeee..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fij A   3 LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESKKTm 244
                                    |-         -       |32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232       242 |
                                   11                 30                                                                                     118-MSE                                                                          199-MSE                222-MSE               244-MSE


Chain B from PDB  Type:PROTEIN  Length:222
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT 241
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.-------------------hhhhhhhhhh..eeeee...hhhhhhhhhhh..eeee......hhhhhh..........hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhh...ee.hhhhh.................eeeee....hhhhhh....ee......ee......eeeeeee....eeeeee......eeee..........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fij B   3 LKPVIGITG-------------------QRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESKKT 243
                                    |-         -        32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232       242 
                                   11                  31                                                                                    118-MSE                                                                          199-MSE                222-MSE                 


Chain C from PDB  Type:PROTEIN  Length:221
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:239
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230         
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESK 239
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.------------------hhhhhhhhhhh..eeeee...hhhhhhhhhh...eeee......hhhhhh..........hhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhh...ee.hhhhh.................eeeee....hhhhh....eee......ee......eeeeeee....eeeeee......eeee..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fij C   3 LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESK 241
                                    |-         -       |32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232         
                                   11                 30                                                                                     118-MSE                                                                          199-MSE                222-MSE               


Chain D from PDB  Type:PROTEIN  Length:223
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT 241
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.------------------hhhhhhhhhhh..eeeee...hhhhhhhhhhh..eeee......hhhhhh..........hhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhh...ee.hhhhh.................eeeee....hhhhh....eee......ee......eeeeeee....eeeeee......eeee..hhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fij D   3 LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESKKT 243
                                    |-         -       |32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232       242 
                                   11                 30                                                                                     118-MSE                                                                          199-MSE                222-MSE                 


Chain E from PDB  Type:PROTEIN  Length:224
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.------------------hhhhhhhhhhh..eeeee...hhhhhhhhhh...eeee......hhhhhh..........hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhh...ee.hhhhh.................eeeee....hhhhh.....ee......ee......eeeeeee....eeeeee......eeee..........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fij E   3 LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESKKTm 244
                                    |-         -       |32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232       242 |
                                   11                 30                                                                                     118-MSE                                                                          199-MSE                222-MSE               244-MSE


Chain F from PDB  Type:PROTEIN  Length:223
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT 241
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.------------------hhhhhhhhhhh..eeeee...hhhhhhhhhhh..eeee......hhhhhh..........hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhh...ee.hhhhh.................eeeee....hhhhh....eee......ee......eeeeeee....eeeeee......eeee..hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fij F   3 LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESKKT 243
                                    |-         -       |32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232       242 
                                   11                 30                                                                                     118-MSE                                                                          199-MSE                222-MSE                 


Chain G from PDB  Type:PROTEIN  Length:222
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKK 240
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee..------------------hhhhhhhhhh..eeeee...hhhhhhhhhh...eeee......hhhhhh..........hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhh...ee.hhhhh.................eeeee....hhhhh.....ee......ee......eeeeeee....eeeeee......eeee..hhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fij G   3 LKPVIGITGN------------------QRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESKK 242
                                    12         -        32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232       242
                                    12                 31                                                                                    118-MSE                                                                          199-MSE                222-MSE                


Chain H from PDB  Type:PROTEIN  Length:224
 aligned with Q92AL3_LISIN | Q92AL3 from UniProtKB/TrEMBL  Length:244

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
         Q92AL3_LISIN     1 MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.------------------hhhhhhhhhhh..eeeee...hhhhhhhhhhh..eeee......hhhhhh..........hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhh...ee.hhhhh.................eeeee...hhhhhhh...eee......ee......eeeeeee....eeeeee......eeee..hhhhh...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fij H   3 LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGmQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGmIEAVEGDNLPSWYLGVQWHPELmFQTDPESEQLFQALVDESKKTm 244
                                    |-         -       |32        42        52        62        72        82        92       102       112     | 122       132       142       152       162       172       182       192      |202       212       222       232       242 |
                                   11                 30                                                                                     118-MSE                                                                          199-MSE                222-MSE               244-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FIJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FIJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FIJ)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q92AL3_LISIN | Q92AL3)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006541    glutamine metabolic process    The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.

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  3fij
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
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  Q92AL3_LISIN | Q92AL3
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    Protein Cavities: castP
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    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q92AL3_LISIN | Q92AL3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3FIJ)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3FIJ)