3FHV - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   STRUCTURAL BASIS OF SALMONELLA TYPHI TYPE IVB PILS AND CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR (CFTR) INTERACTION

Authors :   A. M. Balakrishna, K. Swaminathan

Date :   10 Dec 08 (Deposition) - 27 Oct 09 (Release) - 27 Oct 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Pils Complex, Cftr, Cell Adhesion/Membrane Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. M. Balakrishna, A. M. Saxena, H. Y. Mok, K. Swaminathan
Structural Basis Of Typhoid: Salmonella Typhi Type Ivb Pilin (Pils) And Cystic Fibrosis Transmembrane Conductance Regulator Interaction.
Proteins V. 77 253 2009
PubMed-ID: 19626704 | Reference-DOI: 10.1002/PROT.22500
(for further references see the PDB file header)

Molecule 1 - PREPILIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET32A
	Expression System Strain	:	BL21 DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 26-181
	Gene	:	PILS, STY4547, T4247
	Organism Scientific	:	SALMONELLA TYPHI
	Organism Taxid	:	601
	Synonym	:	PILS

Molecule 2 - CFTR PEPTIDE
	Chains	:	C
	Engineered	:	YES
	Other Details	:	THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THIS SEQUENCE OCCURS NATURALLY IN HUMANS.
	Synthetic	:	YES

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 4)

No.	Name	Count	Type	Full Name
1	DAR	1	Mod. Amino Acid	D-ARGININE
2	DGL	1	Mod. Amino Acid	D-GLUTAMIC ACID
3	DPR	1	Mod. Amino Acid	D-PROLINE
4	DTY	1	Mod. Amino Acid	D-TYROSINE

(no "Site" information available for 3FHV)

Asymmetric/Biological Unit

No.	Residues
1	A:126	-	A:163
2	B:126	-	B:163

(no "Cis Peptide Bond" information available for 3FHV)

(no "SAP(SNP)/Variant" information available for 3FHV)

(no "PROSITE Motif" information available for 3FHV)

(no "Exon" information available for 3FHV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:150
 aligned with Q8Z1L1_SALTI | Q8Z1L1 from UniProtKB/TrEMBL  Length:211

    Alignment length:150
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
         Q8Z1L1_SALTI    62 AGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG 211
               SCOP domains d3fhva_ A: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh......eeeeehhhheeeee.....eeeeeee.........eeeeeeeeehhhhhhhhhhhhhhhh...eeee..eee.....hhhhhhhhh.........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fhv A  32 AGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG 181
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain B from PDB  Type:PROTEIN  Length:150
 aligned with Q8Z1L1_SALTI | Q8Z1L1 from UniProtKB/TrEMBL  Length:211

    Alignment length:150
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
         Q8Z1L1_SALTI    62 AGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG 211
               SCOP domains d3fhvb_ B: automated matches                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh......eeee......eeee.....eeeeee...........eeeeeeeehhhhhhhhhhhhhhhh....eee..eee.....hhhhhhhhh.........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fhv B  32 AGTELTNYQTLATNTIGMMKGVDGYAFTSGAKMTDTLIQAGAAKGMTVSGDPASGSATLWNSWGGQIVVAPDTAGGTGFNNGFTITTNKVPQSACVSISTGMSRSGGTSGIKINGNNHTDAKVTAEIASSECTADNGRTGTNTLVFNYNG 181
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain C from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 3fhv C 108 SxDxDNKExx 117
                             | |   117
                           109-DTY  ||
                             111-DPR||
                                  116-DGL
                                   117-DAR

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Pili subunits (34)

Superfamily: Pili subunits (34)

Family: Pilin (18)

Protein domain: automated matches (9)

Salmonella typhi [TaxId: 601] (2)

1a	d3fhva_	A:
1b	d3fhvb_	B:

(no "CATH Domain" information available for 3FHV)

(no "Pfam Domain" information available for 3FHV)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q8Z1L1_SALTI | Q8Z1L1)

cellular component
	GO:0016021		integral component of membrane		The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020		membrane		A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric/Biological Unit
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		DGL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		DTY	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 3fhv)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3fhv)

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	Q8Z1L1_SALTI \| Q8Z1L1	:	3fhu

3fhu	CRYSTAL STRCUTURE OF TYPE IV B PILIN FROM SALMONELLA TYPHI

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 4)

Sites (0, 0)

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

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Gene Ontology (2, 2)

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