Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF N-TERMINAL ACTIN-BINDING DOMAIN FROM HUMAN FILAMIN B (TANDEM CH-DOMAINS). NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR5571A.
 
Authors :  A. P. Kuzin, M. Abashidze, R. Seetharaman, R. Shastry, S. Sahdev, C. Ciccosanti, R. Xiao, J. K. Everett, Y. Huang, T. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  30 Nov 08  (Deposition) - 06 Jan 09  (Release) - 06 Jan 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  X-Ray Nesg Hr5571A Actin-Binding Domain, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Actin-Binding, Alternative Splicing, Cytoplasm, Cytoskeleton, Developmental Protein, Differentiation, Disease Mutation, Dwarfism, Myogenesis, Phosphoprotein, Polymorphism, Actin Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. P. Kuzin, M. Abashidze, R. Seetharaman, R. Shastry, S. Sahdev, C. Ciccosanti, R. Xiao, J. K. Everett, Y. Huang, T. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of N-Terminal Actin-Binding Domain From Human Filamin B (Tandem Ch-Domains). Northeast Structural Genomics Consortium Target Hr5571A.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FILAMIN-B
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneFLNB, FLN1L, FLN3, TABP, TAP
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFLN-B, BETA-FILAMIN, ACTIN-BINDING-LIKE PROTEIN, THYROID AUTOANTIGEN, TRUNCATED ACTIN-BINDING PROTEIN, TRUNCATED ABP, ABP-280 HOMOLOG, ABP-278, FILAMIN 3, FILAMIN HOMOLOG 1, FH1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1ACY-1Ligand/IonACETIC ACID
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 5)
No.NameCountTypeFull Name
1ACY-1Ligand/IonACETIC ACID
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG C:154BINDING SITE FOR RESIDUE ACY C 263
2AC2SOFTWARETRP B:138 , ASP B:140 , GLY B:142 , ARG B:154BINDING SITE FOR RESIDUE ACY B 263

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FER)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FER)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (9, 36)

Asymmetric Unit (9, 36)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_033069F161CFLNB_HUMANDisease (LRS)80356506A/B/C/DF171C
2UniProtVAR_033070G168SFLNB_HUMANDisease (LRS)80356504A/B/C/DG178S
3UniProtVAR_033071L171RFLNB_HUMANDisease (BOOMD)80356494A/B/C/DL181R
4UniProtVAR_033072A173VFLNB_HUMANDisease (AO1)28937586A/B/C/DA183V
5UniProtVAR_033073S188PFLNB_HUMANDisease (AO1)  ---A/B/C/DS198P
6UniProtVAR_033074M202VFLNB_HUMANDisease (AO3)28939707A/B/C/DM212V
7UniProtVAR_033075E227KFLNB_HUMANDisease (LRS)80356508A/B/C/DE237K
8UniProtVAR_033076L234VFLNB_HUMANDisease (LRS)80356507A/B/C/DL244V
9UniProtVAR_033077S235PFLNB_HUMANDisease (BOOMD)121908896A/B/C/DS245P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (9, 9)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_033069F161CFLNB_HUMANDisease (LRS)80356506AF171C
2UniProtVAR_033070G168SFLNB_HUMANDisease (LRS)80356504AG178S
3UniProtVAR_033071L171RFLNB_HUMANDisease (BOOMD)80356494AL181R
4UniProtVAR_033072A173VFLNB_HUMANDisease (AO1)28937586AA183V
5UniProtVAR_033073S188PFLNB_HUMANDisease (AO1)  ---AS198P
6UniProtVAR_033074M202VFLNB_HUMANDisease (AO3)28939707AM212V
7UniProtVAR_033075E227KFLNB_HUMANDisease (LRS)80356508AE237K
8UniProtVAR_033076L234VFLNB_HUMANDisease (LRS)80356507AL244V
9UniProtVAR_033077S235PFLNB_HUMANDisease (BOOMD)121908896AS245P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (9, 9)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_033069F161CFLNB_HUMANDisease (LRS)80356506BF171C
2UniProtVAR_033070G168SFLNB_HUMANDisease (LRS)80356504BG178S
3UniProtVAR_033071L171RFLNB_HUMANDisease (BOOMD)80356494BL181R
4UniProtVAR_033072A173VFLNB_HUMANDisease (AO1)28937586BA183V
5UniProtVAR_033073S188PFLNB_HUMANDisease (AO1)  ---BS198P
6UniProtVAR_033074M202VFLNB_HUMANDisease (AO3)28939707BM212V
7UniProtVAR_033075E227KFLNB_HUMANDisease (LRS)80356508BE237K
8UniProtVAR_033076L234VFLNB_HUMANDisease (LRS)80356507BL244V
9UniProtVAR_033077S235PFLNB_HUMANDisease (BOOMD)121908896BS245P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (9, 9)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_033069F161CFLNB_HUMANDisease (LRS)80356506CF171C
2UniProtVAR_033070G168SFLNB_HUMANDisease (LRS)80356504CG178S
3UniProtVAR_033071L171RFLNB_HUMANDisease (BOOMD)80356494CL181R
4UniProtVAR_033072A173VFLNB_HUMANDisease (AO1)28937586CA183V
5UniProtVAR_033073S188PFLNB_HUMANDisease (AO1)  ---CS198P
6UniProtVAR_033074M202VFLNB_HUMANDisease (AO3)28939707CM212V
7UniProtVAR_033075E227KFLNB_HUMANDisease (LRS)80356508CE237K
8UniProtVAR_033076L234VFLNB_HUMANDisease (LRS)80356507CL244V
9UniProtVAR_033077S235PFLNB_HUMANDisease (BOOMD)121908896CS245P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (9, 9)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_033069F161CFLNB_HUMANDisease (LRS)80356506DF171C
2UniProtVAR_033070G168SFLNB_HUMANDisease (LRS)80356504DG178S
3UniProtVAR_033071L171RFLNB_HUMANDisease (BOOMD)80356494DL181R
4UniProtVAR_033072A173VFLNB_HUMANDisease (AO1)28937586DA183V
5UniProtVAR_033073S188PFLNB_HUMANDisease (AO1)  ---DS198P
6UniProtVAR_033074M202VFLNB_HUMANDisease (AO3)28939707DM212V
7UniProtVAR_033075E227KFLNB_HUMANDisease (LRS)80356508DE237K
8UniProtVAR_033076L234VFLNB_HUMANDisease (LRS)80356507DL244V
9UniProtVAR_033077S235PFLNB_HUMANDisease (BOOMD)121908896DS245P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 20)

Asymmetric Unit (4, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHPS50021 Calponin homology domain profile.FLNB_HUMAN16-122
 
 
 
139-239
 
 
 
  8A:26-132
B:26-132
C:26-132
D:26-132
A:149-249
B:149-249
C:149-249
D:149-249
2ACTININ_1PS00019 Actinin-type actin-binding domain signature 1.FLNB_HUMAN18-27
 
 
 
  4A:28-37
B:28-37
C:28-37
D:28-37
3ACTININ_2PS00020 Actinin-type actin-binding domain signature 2.FLNB_HUMAN94-118
 
 
 
  4A:104-128
B:104-128
C:104-128
D:104-128
4FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNB_HUMAN249-347
 
 
 
349-446
447-543
544-636
640-736
737-839
840-938
939-1034
1035-1127
1128-1222
1223-1322
1323-1415
1416-1511
1512-1608
1609-1704
1709-1816
1816-1908
1919-1994
1997-2089
2087-2185
2188-2280
2282-2375
2379-2471
2507-2601
  4A:259-261
B:259-261
C:259-261
D:259-261
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 1 (4, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHPS50021 Calponin homology domain profile.FLNB_HUMAN16-122
 
 
 
139-239
 
 
 
  2A:26-132
-
-
-
A:149-249
-
-
-
2ACTININ_1PS00019 Actinin-type actin-binding domain signature 1.FLNB_HUMAN18-27
 
 
 
  1A:28-37
-
-
-
3ACTININ_2PS00020 Actinin-type actin-binding domain signature 2.FLNB_HUMAN94-118
 
 
 
  1A:104-128
-
-
-
4FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNB_HUMAN249-347
 
 
 
349-446
447-543
544-636
640-736
737-839
840-938
939-1034
1035-1127
1128-1222
1223-1322
1323-1415
1416-1511
1512-1608
1609-1704
1709-1816
1816-1908
1919-1994
1997-2089
2087-2185
2188-2280
2282-2375
2379-2471
2507-2601
  1A:259-261
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 2 (4, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHPS50021 Calponin homology domain profile.FLNB_HUMAN16-122
 
 
 
139-239
 
 
 
  2-
B:26-132
-
-
-
B:149-249
-
-
2ACTININ_1PS00019 Actinin-type actin-binding domain signature 1.FLNB_HUMAN18-27
 
 
 
  1-
B:28-37
-
-
3ACTININ_2PS00020 Actinin-type actin-binding domain signature 2.FLNB_HUMAN94-118
 
 
 
  1-
B:104-128
-
-
4FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNB_HUMAN249-347
 
 
 
349-446
447-543
544-636
640-736
737-839
840-938
939-1034
1035-1127
1128-1222
1223-1322
1323-1415
1416-1511
1512-1608
1609-1704
1709-1816
1816-1908
1919-1994
1997-2089
2087-2185
2188-2280
2282-2375
2379-2471
2507-2601
  1-
B:259-261
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 3 (4, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHPS50021 Calponin homology domain profile.FLNB_HUMAN16-122
 
 
 
139-239
 
 
 
  2-
-
C:26-132
-
-
-
C:149-249
-
2ACTININ_1PS00019 Actinin-type actin-binding domain signature 1.FLNB_HUMAN18-27
 
 
 
  1-
-
C:28-37
-
3ACTININ_2PS00020 Actinin-type actin-binding domain signature 2.FLNB_HUMAN94-118
 
 
 
  1-
-
C:104-128
-
4FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNB_HUMAN249-347
 
 
 
349-446
447-543
544-636
640-736
737-839
840-938
939-1034
1035-1127
1128-1222
1223-1322
1323-1415
1416-1511
1512-1608
1609-1704
1709-1816
1816-1908
1919-1994
1997-2089
2087-2185
2188-2280
2282-2375
2379-2471
2507-2601
  1-
-
C:259-261
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 4 (4, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHPS50021 Calponin homology domain profile.FLNB_HUMAN16-122
 
 
 
139-239
 
 
 
  2-
-
-
D:26-132
-
-
-
D:149-249
2ACTININ_1PS00019 Actinin-type actin-binding domain signature 1.FLNB_HUMAN18-27
 
 
 
  1-
-
-
D:28-37
3ACTININ_2PS00020 Actinin-type actin-binding domain signature 2.FLNB_HUMAN94-118
 
 
 
  1-
-
-
D:104-128
4FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNB_HUMAN249-347
 
 
 
349-446
447-543
544-636
640-736
737-839
840-938
939-1034
1035-1127
1128-1222
1223-1322
1323-1415
1416-1511
1512-1608
1609-1704
1709-1816
1816-1908
1919-1994
1997-2089
2087-2185
2188-2280
2282-2375
2379-2471
2507-2601
  1-
-
-
D:259-261
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-

(-) Exons   (4, 16)

Asymmetric Unit (4, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002959561ENSE00001415463chr3:57994127-57994583457FLNB_HUMAN1-98984A:23-108
B:23-108
C:24-108
D:23-108
86
86
85
86
1.2ENST000002959562ENSE00001298400chr3:58062773-58063021249FLNB_HUMAN98-181844A:108-191 (gaps)
B:108-191 (gaps)
C:108-191 (gaps)
D:108-191 (gaps)
84
84
84
84
1.4ENST000002959564ENSE00001315475chr3:58064444-5806454198FLNB_HUMAN181-213334A:191-223
B:191-223
C:191-223
D:191-223
33
33
33
33
1.5ENST000002959565ENSE00001299267chr3:58067356-58067503148FLNB_HUMAN214-263504A:224-261
B:224-261
C:224-261
D:224-261
38
38
38
38
1.6ENST000002959566ENSE00001661279chr3:58080563-58080681119FLNB_HUMAN263-302400--
1.7ENST000002959567ENSE00001295579chr3:58081868-5808194578FLNB_HUMAN303-328260--
1.8ENST000002959568ENSE00001312484chr3:58083542-58083704163FLNB_HUMAN329-383550--
1.9ENST000002959569ENSE00001316025chr3:58084438-58084635198FLNB_HUMAN383-449670--
1.10ENST0000029595610ENSE00001295364chr3:58087930-58088067138FLNB_HUMAN449-495470--
1.11ENST0000029595611ENSE00001180356chr3:58089686-58089812127FLNB_HUMAN495-537430--
1.12ENST0000029595612ENSE00001296552chr3:58090807-58090943137FLNB_HUMAN537-583470--
1.13ENST0000029595613ENSE00001313345chr3:58092407-58092600194FLNB_HUMAN583-647650--
1.14ENST0000029595614ENSE00001180347chr3:58094185-58094298114FLNB_HUMAN648-685380--
1.15ENST0000029595615ENSE00001180346chr3:58094906-58095049144FLNB_HUMAN686-733480--
1.16ENST0000029595616ENSE00001180344chr3:58095303-58095426124FLNB_HUMAN734-775420--
1.17ENST0000029595617ENSE00001180363chr3:58095737-58095897161FLNB_HUMAN775-828540--
1.18ENST0000029595618ENSE00001212915chr3:58097518-5809760891FLNB_HUMAN829-859310--
1.19ENST0000029595619ENSE00001212911chr3:58097876-58098045170FLNB_HUMAN859-915570--
1.20ENST0000029595620ENSE00001180403chr3:58104599-58104716118FLNB_HUMAN916-955400--
1.21ENST0000029595621ENSE00001077282chr3:58106968-58107230263FLNB_HUMAN955-1042880--
1.22ENST0000029595622ENSE00001077198chr3:58108820-58109417598FLNB_HUMAN1043-12422000--
1.23ENST0000029595623ENSE00001180390chr3:58110059-58110232174FLNB_HUMAN1242-1300590--
1.24ENST0000029595624ENSE00001077200chr3:58111308-58111470163FLNB_HUMAN1300-1354550--
1.25ENST0000029595625ENSE00000861937chr3:58112329-58112489161FLNB_HUMAN1354-1408550--
1.26ENST0000029595626ENSE00001328202chr3:58116468-58116635168FLNB_HUMAN1408-1464570--
1.28bENST0000029595628bENSE00001306228chr3:58118535-58118658124FLNB_HUMAN1464-1505420--
1.29ENST0000029595629ENSE00000861956chr3:58120343-58120499157FLNB_HUMAN1505-1557530--
1.30ENST0000029595630ENSE00001306477chr3:58121706-58121895190FLNB_HUMAN1558-1621640--
1.31ENST0000029595631ENSE00001077270chr3:58124009-58124256248FLNB_HUMAN1621-1703830--
1.32bENST0000029595632bENSE00001302065chr3:58127585-5812765672FLNB_HUMAN1704-1727240--
1.33ENST0000029595633ENSE00001077215chr3:58128377-58128479103FLNB_HUMAN1728-1762350--
1.34ENST0000029595634ENSE00000861939chr3:58129200-58129340141FLNB_HUMAN1762-1809480--
1.35ENST0000029595635ENSE00001321882chr3:58131648-58131776129FLNB_HUMAN1809-1852440--
1.36bENST0000029595636bENSE00001794478chr3:58132547-58132720174FLNB_HUMAN1852-1910590--
1.37ENST0000029595637ENSE00001077251chr3:58133933-58134091159FLNB_HUMAN1910-1963540--
1.38ENST0000029595638ENSE00001077284chr3:58134376-58134579204FLNB_HUMAN1963-2031690--
1.39bENST0000029595639bENSE00001299342chr3:58135577-58135729153FLNB_HUMAN2031-2082520--
1.40aENST0000029595640aENSE00001077210chr3:58135832-58135954123FLNB_HUMAN2082-2123420--
1.42bENST0000029595642bENSE00002184457chr3:58139102-58139368267FLNB_HUMAN2123-2212900--
1.43bENST0000029595643bENSE00001690887chr3:58140518-58140655138FLNB_HUMAN2212-2258470--
1.44aENST0000029595644aENSE00001770288chr3:58141687-58141802116FLNB_HUMAN2258-2296390--
1.45aENST0000029595645aENSE00001794279chr3:58145281-58145413133FLNB_HUMAN2297-2341450--
1.46aENST0000029595646aENSE00001646117chr3:58148881-58149057177FLNB_HUMAN2341-2400600--
1.48aENST0000029595648aENSE00001767941chr3:58154167-58154385219FLNB_HUMAN2400-2473740--
1.48cENST0000029595648cENSE00001616994chr3:58155317-58155520204FLNB_HUMAN2473-2541690--
1.49dENST0000029595649dENSE00001627815chr3:58156302-581579781677FLNB_HUMAN2541-2602620--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with FLNB_HUMAN | O75369 from UniProtKB/Swiss-Prot  Length:2602

    Alignment length:239
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242         
           FLNB_HUMAN    13 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPGAPLKPK 251
               SCOP domains d3fera1 A:23-134 automated matches                                                                              -------------d3fera2 A:148-261 automated matches                                                                                SCOP domains
               CATH domains 3ferA01 A:23-137 Actin-binding Protein, T-fimbrin; domain 1                                                        ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.......hhhhhhh.hhhhhhhhhhhhhhhhhh.........-----..hhhhhhhhhhhhhh........hhhhh.hhhhhhhhhhhh.....hhhhh...hhhhhhhhhhhhhhhhh......hhhhhh....hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------C------S--R-V--------------P-------------V------------------------K------VP---------------- SAPs(SNPs)
                PROSITE (1) ---CH  PDB: A:26-132 UniProt: 16-122                                                                          ----------------CH  PDB: A:149-249 UniProt: 139-239                                                                  ---------FIL PROSITE (1)
                PROSITE (2) -----ACTININ_1 ------------------------------------------------------------------ACTININ_2  PDB: A:104-128------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:23-108 UniProt: 1-98 [INCOMPLETE]                                    ----------------------------------------------------------------------------------Exon 1.4  PDB: A:191-223         Exon 1.5  PDB: A:224-261 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.2  PDB: A:108-191 (gaps) UniProt: 98-181                                     ---------------------------------------------------------------------- Transcript 1 (2)
                 3fer A  23 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRmYRKYHQRPTFRQmQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISmPVWEDEG-----KQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAmQQADDWLGVPQVITPEEIIHPDVDEHSVmTYLSQFPKAKLKPGAPLKPK 261
                                    32        42        52        62        72        82  |     92       102       112       122       132  |    142     | 152       162       172       182       192       202       212       222       232       242       252         
                                                                            72-MSE       85-MSE                                           135-MSE142   148                                                             212-MSE                      241-MSE                

Chain B from PDB  Type:PROTEIN  Length:234
 aligned with FLNB_HUMAN | O75369 from UniProtKB/Swiss-Prot  Length:2602

    Alignment length:239
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242         
           FLNB_HUMAN    13 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPGAPLKPK 251
               SCOP domains d3ferb1 B:23-134 automated matches                                                                              -------------d3ferb2 B:148-261 automated matches                                                                                SCOP domains
               CATH domains 3ferB01 B:23-137 Actin-binding Protein, T-fimbrin; domain 1                                                        ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhhhhhhhhhhh.........-----..hhhhhhhhhhhhhh........hhhhh.hhhhhhhhhhhh.....hhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------C------S--R-V--------------P-------------V------------------------K------VP---------------- SAPs(SNPs)
                PROSITE (1) ---CH  PDB: B:26-132 UniProt: 16-122                                                                          ----------------CH  PDB: B:149-249 UniProt: 139-239                                                                  ---------FIL PROSITE (1)
                PROSITE (2) -----ACTININ_1 ------------------------------------------------------------------ACTININ_2  PDB: B:104-128------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: B:23-108 UniProt: 1-98 [INCOMPLETE]                                    ----------------------------------------------------------------------------------Exon 1.4  PDB: B:191-223         Exon 1.5  PDB: B:224-261 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.2  PDB: B:108-191 (gaps) UniProt: 98-181                                     ---------------------------------------------------------------------- Transcript 1 (2)
                 3fer B  23 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRmYRKYHQRPTFRQmQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISmPVWEDEG-----KQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAmQQADDWLGVPQVITPEEIIHPDVDEHSVmTYLSQFPKAKLKPGAPLKPK 261
                                    32        42        52        62        72        82  |     92       102       112       122       132  |    142     | 152       162       172       182       192       202       212       222       232       242       252         
                                                                            72-MSE       85-MSE                                           135-MSE142   148                                                             212-MSE                      241-MSE                

Chain C from PDB  Type:PROTEIN  Length:225
 aligned with FLNB_HUMAN | O75369 from UniProtKB/Swiss-Prot  Length:2602

    Alignment length:238
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243        
           FLNB_HUMAN    14 WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPGAPLKPK 251
               SCOP domains d3ferc1 C:24-134 automated matches                                                                             -------------d3ferc2 C:148-261 automated matches                                                                                SCOP domains
               CATH domains 3ferC01 C:24-134 Actin-binding Protein, T-fimbrin; domain 1                                                    ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh..-------------..hhhhhhhhhhhhhh........hhhhh.hhhhhhhhhhhh.....hhhhh...hhhhhhhhhhhhhhhhh......hhhhhhh...hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------C------S--R-V--------------P-------------V------------------------K------VP---------------- SAPs(SNPs)
                PROSITE (1) --CH  PDB: C:26-132 UniProt: 16-122                                                                          ----------------CH  PDB: C:149-249 UniProt: 139-239                                                                  ---------FIL PROSITE (1)
                PROSITE (2) ----ACTININ_1 ------------------------------------------------------------------ACTININ_2  PDB: C:104-128------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: C:24-108 UniProt: 1-98 [INCOMPLETE]                                   ----------------------------------------------------------------------------------Exon 1.4  PDB: C:191-223         Exon 1.5  PDB: C:224-261 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------Exon 1.2  PDB: C:108-191 (gaps) UniProt: 98-181                                     ---------------------------------------------------------------------- Transcript 1 (2)
                 3fer C  24 WKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRmYRKYHQRPTFRQmQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS-------------KQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAmQQADDWLGVPQVITPEEIIHPDVDEHSVmTYLSQFPKAKLKPGAPLKPK 261
                                    33        43        53        63        73        83 |      93       103       113       123       133|        -    |  153       163       173       183       193       203       213       223       233       243       253        
                                                                           72-MSE       85-MSE                                          134           148                                                             212-MSE                      241-MSE                

Chain D from PDB  Type:PROTEIN  Length:234
 aligned with FLNB_HUMAN | O75369 from UniProtKB/Swiss-Prot  Length:2602

    Alignment length:239
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242         
           FLNB_HUMAN    13 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPGAPLKPK 251
               SCOP domains d3ferd1 D:23-134 automated matches                                                                              -------------d3ferd2 D:148-261 automated matches                                                                                SCOP domains
               CATH domains 3ferD01 D:23-137 Actin-binding Protein, T-fimbrin; domain 1                                                        ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.......hhhhhhh.hhhhhhhhhhhhhhhhhh.........-----..hhhhhhhhhhhhhh........hhhhh.hhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------C------S--R-V--------------P-------------V------------------------K------VP---------------- SAPs(SNPs)
                PROSITE (1) ---CH  PDB: D:26-132 UniProt: 16-122                                                                          ----------------CH  PDB: D:149-249 UniProt: 139-239                                                                  ---------FIL PROSITE (1)
                PROSITE (2) -----ACTININ_1 ------------------------------------------------------------------ACTININ_2  PDB: D:104-128------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: D:23-108 UniProt: 1-98 [INCOMPLETE]                                    ----------------------------------------------------------------------------------Exon 1.4  PDB: D:191-223         Exon 1.5  PDB: D:224-261 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.2  PDB: D:108-191 (gaps) UniProt: 98-181                                     ---------------------------------------------------------------------- Transcript 1 (2)
                 3fer D  23 PWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRmYRKYHQRPTFRQmQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISmPVWEDEG-----KQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAmQQADDWLGVPQVITPEEIIHPDVDEHSVmTYLSQFPKAKLKPGAPLKPK 261
                                    32        42        52        62        72        82  |     92       102       112       122       132  |    142     | 152       162       172       182       192       202       212       222       232       242       252         
                                                                            72-MSE       85-MSE                                           135-MSE142   148                                                             212-MSE                      241-MSE                

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FER)

(-) Gene Ontology  (24, 24)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (FLNB_HUMAN | O75369)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030036    actin cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0007016    cytoskeletal anchoring at plasma membrane    A cytoskeleton organization process that directly or indirectly links cytoskeletal filaments to the plasma membrane.
    GO:0003382    epithelial cell morphogenesis    The change in form that occurs when an epithelial cell progresses from its initial formation to its mature state.
    GO:0003334    keratinocyte development    The process whose specific outcome is the progression of a keratinocyte over time, from its formation to the mature structure.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0007517    muscle organ development    The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007519    skeletal muscle tissue development    The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers.
cellular component
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005903    brush border    The dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0001725    stress fiber    A contractile actin filament bundle that consists of short actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACY  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3fer)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3fer
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  FLNB_HUMAN | O75369
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  108720
    Disease InformationOMIM
  108721
    Disease InformationOMIM
  112310
    Disease InformationOMIM
  150250
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  FLNB_HUMAN | O75369
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLNB_HUMAN | O753692di8 2di9 2dia 2dib 2dic 2dj4 2dlg 2dmb 2dmc 2e9i 2e9j 2ee6 2ee9 2eea 2eeb 2eec 2eed 2wa5 2wa6 2wa7 4b7l 5dcp

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3FER)