3FEO - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF MBTD1

Authors :   M. F. Amaya, J. Eryilmaz, I. Kozieradzki, A. M. Edwards, C. H. Arrowsmit J. Weigelt, C. Bountra, A. Bochkarev, J. Min, Structural Genomics C (Sgc)

Date :   30 Nov 08 (Deposition) - 06 Jan 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Mbtl1, Structural Genomics, Structural Genomics Consortium, Sgc, Metal-Binding, Nucleus, Zinc-Finger, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Eryilmaz, P. Pan, M. F. Amaya, A. Allali-Hassani, A. Dong, M. A. Adams-Cioaba, F. Mackenzie, M. Vedadi, J. Min
Structural Studies Of A Four-Mbt Repeat Protein Mbtd1.
Plos One V. 4 E7274 2009
PubMed-ID: 19841675 | Reference-DOI: 10.1371/JOURNAL.PONE.0007274

Molecule 1 - MBT DOMAIN-CONTAINING PROTEIN 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	MBTD1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3FEO)

(no "Site" information available for 3FEO)

(no "SS Bond" information available for 3FEO)

Asymmetric Unit

No.	Residues
1	Leu A:333	-	Pro A:334
2	Leu B:333	-	Pro B:334

(no "SAP(SNP)/Variant" information available for 3FEO)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MBT	PS51079	MBT repeat profile.	MBTD1_HUMAN	141-245 351-456 253-349 464-560	8	A:12-116 B:12-116 A:222-327 B:222-327 A:124-220 B:124-220 A:335-431 B:335-431

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MBT	PS51079	MBT repeat profile.	MBTD1_HUMAN	141-245 351-456 253-349 464-560	4	A:12-116 - A:222-327 - A:124-220 - A:335-431 -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MBT	PS51079	MBT repeat profile.	MBTD1_HUMAN	141-245 351-456 253-349 464-560	4	- B:12-116 - B:222-327 - B:124-220 - B:335-431

(no "Exon" information available for 3FEO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:407
 aligned with MBTD1_HUMAN | Q05BQ5 from UniProtKB/Swiss-Prot  Length:628

    Alignment length:421
                                   150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560 
          MBTD1_HUMAN   141 FSWGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRFKRSDITKKQDGHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPA 561
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3feoA01 A:12-151  [code=2.30.30.160, no name     defined]                                                                                   ------------------------------------------------------------------------         -----------------3feoA03 A:250-358  [code=2.30.30.160, no name  defined]                                                      -------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....hhhhh................eeeee....----..eeeeeeeeee..eeeeee..........eeee......ee.hhhhhhh.....hhhhh....hhhhhhhhhhh.......hhhhhhhhhh.......eeeeeee..eeeeeeeeeeeeee..eeeeee........eeeee.....ee..hhhhhhh....---------..ee.hhhhh.................eeeeee..eeeeeeeeeeeee....eeeeee.....-.....eeee.....ee..hhhhhhh..ee..........hhhhhhhhhh....hhhhhh............eeeee.......eeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhhh..ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE MBT  PDB: A:12-116 UniProt: 141-245                                                                      -------MBT  PDB: A:124-220 UniProt: 253-349                                                             -MBT  PDB: A:222-327 UniProt: 351-456                                                                      -------MBT  PDB: A:335-431 UniProt: 464-560                                                             - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3feo A  12 FSWGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTDC----KVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRFK---------GHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGSEA-DGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPA 432
                                    21        31        41        51    |   61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221 |       - |     241       251       261       271       281       291   | | 301       311       321       331       341       351       361       371       381       391       401       411       421       431 
                                                                       56   61                                                                                                                                                               223       233                                                           295 |                                                                                                                                       
                                                                                                                                                                                                                                                                                                                       297

Chain B from PDB  Type:PROTEIN  Length:397
 aligned with MBTD1_HUMAN | Q05BQ5 from UniProtKB/Swiss-Prot  Length:628

    Alignment length:421
                                   150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560 
          MBTD1_HUMAN   141 FSWGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRFKRSDITKKQDGHFDTPPHLFAKVKEVDQSGEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPA 561
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3feoB01 B:12-151  [code=2.30.30.160, no name      defined]                                                                                  ----------------------------------------------  -----------------------           --------------    3feoB03 B:252-358  [code=2.30.30.160, no name defined]                                                     -------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....hhhhh................eeeee...-----..eeeeeeeeee..eeeeee..........eeee...-..ee......-......hhhhh....hhhhhhhhhhh.......hhhhhhhhhh.......eeeeee.......eeeeeeeeee..eeeeee.......--.eee.....ee..hhhhhhh...-----------.ee.hhhhh.....----........eeeeee..eeeeeeeeeeeee....eeeeee...........eeee.....ee..hhhhhh...ee..........hhhhhhhhh.....hhhhhh............eeeee.......eeeeeeeeee..eeeeee...hhhhheeee.....ee..hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE MBT  PDB: B:12-116 UniProt: 141-245                                                                      -------MBT  PDB: B:124-220 UniProt: 253-349                                                             -MBT  PDB: B:222-327 UniProt: 351-456                                                                      -------MBT  PDB: B:335-431 UniProt: 464-560                                                             - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3feo B  12 FSWGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRVEVPNTD-----KVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICG-DIHPVGWCAA-GKPLVPPRTIQHKYTNWKAFLVKRLTGAKTLPPDFSQKVSESMQYPFKPCMRVEVVDKRHLCRTRVAVVESVIGGRLRLVYEESEDRT--FWCHMHSPLIHHIGWSRSIGHRF-----------HFDTPPHLFAKVKE----GEWFKEGMKLEAIDPLNLSTICVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLPFKWFDYLRETGSIAAPVKLFNKDVPNHGFRVGMKLEAVDLMEPRLICVATVTRIIHRLLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPA 432
                                    21        31        41        51   |    61        71        81        91     | 101      |111       121       131       141       151       161       171       181       191     | 201       211       221|        -  |    241     |   -|      261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431 
                                                                      55    61                                  97 |      108 |                                                                                    197  |                   222         234          247  252                                                                                                                                                                                    
                                                                                                                  99        110                                                                                       200

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3FEO)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: SH3 type barrels. (648)

Homologous Superfamily: [code=2.30.30.160, no name defined] (35)

Human (Homo sapiens) (27)

1a	3feoB03	B:252-358
1b	3feoA03	A:250-358
1c	3feoB01	B:12-151
1d	3feoA01	A:12-151

(no "Pfam Domain" information available for 3FEO)

Asymmetric Unit(hide GO term definitions)

Chain A,B (MBTD1_HUMAN | Q05BQ5)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0048706	embryonic skeletal system development	The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3feo)

	Sites
(no "Sites" information available for 3feo)

	Cis Peptide Bonds
		Leu A:333 - Pro A:334	[ RasMol ]
		Leu B:333 - Pro B:334	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
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Description

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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