3F67 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PUTATIVE DIENELACTONE HYDROLASE FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578

Authors :   Y. Kim, H. Li, J. Bearden, A. Joachimiak, Midwest Center For Structu Genomics (Mcsg)

Date :   05 Nov 08 (Deposition) - 25 Nov 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.74

Chains :   Asym./Biol. Unit : A

Keywords :   Alpha-Beta-Alpha Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, H. Li, J. Bearden, A. Joachimiak
Crystal Structure Of Putative Dienelactone Hydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
To Be Published
PubMed: search

Molecule 1 - PUTATIVE DIENELACTONE HYDROLASE
	Chains	:	A
	EC Number	:	3.1.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG19
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 28-265
	Gene	:	KPN78578_42700, KPN_04326, YSGA
	Organism Scientific	:	KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578
	Organism Taxid	:	272620
	Strain	:	ATCC 700721; MGH 78578

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 7)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	FMT	2	Ligand/Ion	FORMIC ACID
4	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:5 , ALA A:17 , TYR A:18 , VAL A:41 , ARG A:46 , GLU A:63	BINDING SITE FOR RESIDUE EDO A 239
2	AC2	SOFTWARE	GLU A:55 , ARG A:113 , HOH A:365	BINDING SITE FOR RESIDUE FMT A 240
3	AC3	SOFTWARE	VAL A:203 , TYR A:204 , PRO A:205 , HOH A:402	BINDING SITE FOR RESIDUE FMT A 241
4	AC4	SOFTWARE	SER A:102 , ARG A:106 , HOH A:249 , HOH A:258 , HOH A:259 , HOH A:286 , HOH A:287	BINDING SITE FOR RESIDUE ACY A 242

(no "SS Bond" information available for 3F67)

(no "Cis Peptide Bond" information available for 3F67)

(no "SAP(SNP)/Variant" information available for 3F67)

(no "PROSITE Motif" information available for 3F67)

(no "Exon" information available for 3F67)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:240
 aligned with A6TGL0_KLEP7 | A6TGL0 from UniProtKB/TrEMBL  Length:270

    Alignment length:240
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265
         A6TGL0_KLEP7    26 EHIIAGETSIPSQGENMPAYHARPKNADGPLPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGKLVGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQY 265
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3f67A00 A:-1-238  [code=3.40.50.1820, no name defined]                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeee..eeeeeeeeee......eeeeeee......hhhhhhhhhhhhhh..eeeee.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhhhhhhhhh......eeeee..............hhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh...eeeeee...............hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3f67 A  -1 NAIIAGETSIPSQGENmPAYHARPKNADGPLPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGKLVGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETmRQALRAANATAEIVVYPEADHAFNADYRASYHEESAKDGWQRmLAWFAQY 238
                                     8      | 18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228  |    238
                                           15-MSE                                                                                                                                                                      188-MSE                                    231-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3F67)

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1820, no name defined] (692)

Pneumoniae mgh 78578 (Klebsiella pneumoniae subsp) (1)

3f67A00

A:-1-238

(no "Pfam Domain" information available for 3F67)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (A6TGL0_KLEP7 | A6TGL0)

molecular function
	GO:0016787		hydrolase activity		Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

Asymmetric/Biological Unit
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		AC2	[ RasMol ]	+environment [ RasMol ]
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		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3f67)

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	3f67
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(no "Entries Sharing at Least One Protein Chain" available for 3F67)

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Description

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Ligands, Modified Residues, Ions (4, 7)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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