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(-) Description

Title :  CRYSTAL STRUCTURE OF ATP-BOUND PHOSPHOFRUCTOKINASE FROM TRYPANOSOMA BRUCEI
 
Authors :  I. W. Mcnae, J. Martinez-Oyanedel, J. W. Keillor, P. A. M. Michels, L. A. Fothergill-Gilmore, M. D. Walkinshaw
Date :  04 Nov 08  (Deposition) - 25 Nov 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  6-Phospho-1-Fructokinase, Glycolysis, Atp Binding, Kinase Activity, Atp-Binding, Kinase, Nucleotide-Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. W. Mcnae, J. Martinez-Oyanedel, J. W. Keillor, P. A. Michels, L. A. Fothergill-Gilmore, M. D. Walkinshaw
The Crystal Structure Of Atp-Bound Phosphofructokinase From Trypanosoma Brucei Reveals Conformational Transitions Different From Those Of Other Phosphofructokinases.
J. Mol. Biol. V. 385 1519 2009
PubMed-ID: 19084537  |  Reference-DOI: 10.1016/J.JMB.2008.11.047

(-) Compounds

Molecule 1 - 6-PHOSPHO-1-FRUCTOKINASE (ATP-DEPENDENT PHOSPHOFRUCTOKINASE)
    Chains: A, B, C, D
    EC Number: 2.7.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: TRYPANOSOMA BRUCEI
    Organism Taxid: 5691

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 14)

Asymmetric/Biological Unit (5, 14)
No.NameCountTypeFull Name
1ATP4Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2GOL2Ligand/IonGLYCEROL
3MG3Ligand/IonMAGNESIUM ION
4NA4Ligand/IonSODIUM ION
5SO41Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:106 , GLY A:107 , TYR A:139 , ARG A:173 , GLY A:174 , PRO A:175 , GLY A:198 , ASP A:199 , GLY A:200 , THR A:201 , GLY A:204 , LYS A:226 , SER A:341 , ASN A:343 , MG A:1002BINDING SITE FOR RESIDUE ATP A1001
02AC2SOFTWAREASN A:343 , ATP A:1001BINDING SITE FOR RESIDUE MG A1002
03AC3SOFTWAREASN A:291 , ILE A:292 , CYS A:293 , LEU A:308 , THR A:451 , VAL A:452 , HOH A:556BINDING SITE FOR RESIDUE GOL A 488
04AC4SOFTWAREARG A:448 , THR A:451 , VAL A:452 , ASP A:453BINDING SITE FOR RESIDUE NA A 489
05AC5SOFTWAREALA A:259 , VAL A:260 , ALA A:262 , ARG A:317 , SER A:318BINDING SITE FOR RESIDUE NA A 490
06AC6SOFTWAREGLY B:106 , GLY B:107 , TYR B:139 , ARG B:173 , GLY B:174 , PRO B:175 , GLY B:198 , ASP B:199 , GLY B:200 , THR B:201 , ARG B:203 , GLY B:204 , LYS B:226 , SER B:341 , ASN B:343 , HOH B:557 , MG B:1002BINDING SITE FOR RESIDUE ATP B1001
07AC7SOFTWAREASN B:343 , HOH B:588 , ATP B:1001BINDING SITE FOR RESIDUE MG B1002
08AC8SOFTWAREVAL B:260 , ALA B:262 , ARG B:317 , SER B:318BINDING SITE FOR RESIDUE NA B 488
09AC9SOFTWAREGLY C:106 , GLY C:107 , TYR C:139 , ARG C:173 , GLY C:174 , PRO C:175 , GLY C:198 , ASP C:199 , GLY C:200 , THR C:201 , ARG C:203 , GLY C:204 , LYS C:226 , SER C:341 , ASN C:343BINDING SITE FOR RESIDUE ATP C1001
10BC1SOFTWAREILE C:292 , CYS C:293 , ASN C:298 , THR C:451 , NA C:490 , HOH C:549 , HOH C:559BINDING SITE FOR RESIDUE GOL C 488
11BC2SOFTWAREGLY C:106 , GLY C:107BINDING SITE FOR RESIDUE SO4 C 489
12BC3SOFTWAREARG C:448 , THR C:451 , VAL C:452 , ASP C:453 , GOL C:488BINDING SITE FOR RESIDUE NA C 490
13BC4SOFTWAREGLY D:107 , TYR D:139 , ARG D:173 , GLY D:174 , PRO D:175 , GLY D:198 , ASP D:199 , GLY D:200 , THR D:201 , ARG D:203 , GLY D:204 , LYS D:226 , SER D:341 , ASN D:343 , HOH D:488 , HOH D:575 , MG D:1002BINDING SITE FOR RESIDUE ATP D1001
14BC5SOFTWAREASN D:343 , ATP D:1001BINDING SITE FOR RESIDUE MG D1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F5M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3F5M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F5M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F5M)

(-) Exons   (0, 0)

(no "Exon" information available for 3F5M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:458
 aligned with PFKA_TRYBB | O15648 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:476
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479      
           PFKA_TRYBB    10 TSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHEELA 485
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.........hhhhhh.ee.....ee.hhhh---------...eee......-----.........eeee.....ee..hhhh.eeeeee......hhhhhhhhhhhhhhhh....eeee..hhhhhhh.hhhhhheeehhhhhhhhhhh............hhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh....eeeeee..............hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.eeeeeee...hhhhh.----..........hhhhhhhhhhhhhhhh........eeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhh.ee.eeeeee..eeeeeehhhhh.eeeee...hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f5m A  10 TSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKK---------KTDYIMYNPRPR-----ENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGR----YDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHEELA 485
                                    19        29        39     |   -     |  59      |  -  |     79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329   |   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479      
                                                              45        55         66    72                                                                                                                                                                                                                                                                  333  338                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:462
 aligned with PFKA_TRYBB | O15648 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:476
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477      
           PFKA_TRYBB     8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHEE 483
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.........hhhhhh.ee.....ee.hhhh--------....eee.......--...........eeee.....ee..hhhh.eeeeee......hhhhhhhhhhhhhhhh....eeee..hhhhhhh.hhhhhheeehhhhhhhhhhh............hhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh....eeeeee..............hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.eeeeeee...hhhhh.----..........hhhhhhhhhhhhhhhh........eeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhh.ee.eeeeee..eeeeeehhhhh.eeeee...hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f5m B   8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKK--------DKTDYIMYNPRPRD--SSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGR----YDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHEE 483
                                    17        27        37       | -      | 57        67  |     77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327     |   -|      347       357       367       377       387       397       407       417       427       437       447       457       467       477      
                                                                45       54           67 70                                                                                                                                                                                                                                                                    333  338                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:461
 aligned with PFKA_TRYBB | O15648 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:478
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477        
           PFKA_TRYBB     8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHEELA 485
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.........hhhhhh........ee.hhhh---------...eee.......----.........eeee.....ee..hhhh.eeeeee......hhhhhhhhhhhhhhhh....eeee..hhhhhhh.hhhhhheeehhhhhhhhhhh............hhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh....eeeeee..............hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhh...eee......hhhhhhhhhhhhh....eeeeeee...hhhhh.----..........hhhhhhhhhhhhhhhh........eeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeeeehhhhh.eeeee...hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f5m C   8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKK---------KTDYIMYNPRPRD----ENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGR----YDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHEELA 485
                                    17        27        37       | -       |57        67    |   77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327     |   -|      347       357       367       377       387       397       407       417       427       437       447       457       467       477        
                                                                45        55          67   72                                                                                                                                                                                                                                                                  333  338                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:458
 aligned with PFKA_TRYBB | O15648 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:475
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477     
           PFKA_TRYBB     8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSRTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHE 482
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee................ee.....ee.hhhh---------...eee.......----.........eeee.....ee..hhhh.eeeeee......hhhhhhhhhhhhhhhh....eeee..hhhhhhh.hhhhhheeehhhhhhhhhhh............hhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh....eeeeee..............hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.eeeeeee...hhhhh.----..........hhhhhhhhhhhhhhhh........eeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhh.ee.eeeeee..eeeeeehhhhh.eeeee...hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f5m D   8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKK---------KTDYIMYNPRPRD----ENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGR----YDASGNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGSDVRLARKLEIRRELEAINRNRDRLHE 482
                                    17        27        37       | -       |57        67    |   77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327     |   -|      347       357       367       377       387       397       407       417       427       437       447       457       467       477     
                                                                45        55          67   72                                                                                                                                                                                                                                                                  333  338
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3F5M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3F5M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F5M)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (PFKA_TRYBB | O15648)
molecular function
    GO:0003872    6-phosphofructokinase activity    Catalysis of the reaction: ATP + D-fructose-6-phosphate = ADP + D-fructose 1,6-bisphosphate.
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006002    fructose 6-phosphate metabolic process    The chemical reactions and pathways involving fructose 6-phosphate, also known as F6P. The D-enantiomer is an important intermediate in glycolysis, gluconeogenesis, and fructose metabolism.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0061615    glycolytic process through fructose-6-phosphate    The chemical reactions and pathways resulting in the breakdown of a monosaccharide into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0020015    glycosome    A membrane-bounded organelle found in organisms from the order Kinetoplastida that houses the enzymes of glycolysis.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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  3f5m
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  2.7.1.11
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PFKA_TRYBB | O15648: 2hig 3cvl

(-) Related Entries Specified in the PDB File

1mto 1pfk 2hig 2pfk 3pfk 4pfk