3F5E - JenaLib

Title :   CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 BOUND TO 2'F-3'SIALACNAC1-3

Authors :   J. A. Garnett, Y. Liu, T. Feizi, S. J. Matthews

Date :   03 Nov 08 (Deposition) - 28 Jul 09 (Release) - 17 Feb 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Cellular Adhesion, Micronemal Protein 1, Toxoplasma Gondii, Carbohydrate, Fluorine, Cell Adhesion, Cytoplasmic Vesicle, Lectin, Virulence (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. A. Garnett, Y. Liu, E. Leon, S. A. Allman, N. Friedrich, S. Saouros, S. Curry, D. Soldati-Favre, B. G. Davis, T. Feizi, S. Matthews
Detailed Insights From Microarray And Crystallographic Studies Into Carbohydrate Recognition By Microneme Protein (Mic1) Of Toxoplasma Gondii.
Protein Sci. V. 18 1935 2009
PubMed-ID: 19593815 | Reference-DOI: 10.1002/PRO.204
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 19)

Sites (17, 17)

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:17 , ASP A:89 , ASP A:90 , CYS A:187 , GOL A:601	BINDING SITE FOR RESIDUE CL A 301
02	AC2	SOFTWARE	LYS A:200 , HIS A:202 , TYR A:203 , THR A:204 , GLN A:242 , 2FG A:402 , NAG A:403 , HOH A:1145	BINDING SITE FOR RESIDUE SIA A 401
03	AC3	SOFTWARE	GLN A:242 , SIA A:401 , NAG A:403 , HOH A:1170	BINDING SITE FOR RESIDUE 2FG A 402
04	AC4	SOFTWARE	HIS A:102 , ASN A:105 , SIA A:401 , 2FG A:402	BINDING SITE FOR RESIDUE NAG A 403
05	AC5	SOFTWARE	ASN A:86 , THR A:94 , LYS A:166	BINDING SITE FOR RESIDUE ACT A 501
06	AC6	SOFTWARE	MSE A:24 , ARG A:28 , HOH A:1043 , HOH A:1178	BINDING SITE FOR RESIDUE ACT A 502
07	AC7	SOFTWARE	PRO A:47 , SER A:48 , SER A:49 , ACT A:507 , HOH A:1133 , HOH A:1151 , HOH A:1155	BINDING SITE FOR RESIDUE ACT A 503
08	AC8	SOFTWARE	GLN A:62 , HIS A:108 , ALA A:109 , THR A:110 , ARG A:111 , ACT A:506	BINDING SITE FOR RESIDUE ACT A 504
09	AC9	SOFTWARE	PRO A:96 , CYS A:97 , PRO A:98 , LEU A:170 , TYR A:171 , SER A:172	BINDING SITE FOR RESIDUE ACT A 505
10	BC1	SOFTWARE	LYS A:43 , SER A:106 , ASN A:107 , HIS A:108 , ACT A:504	BINDING SITE FOR RESIDUE ACT A 506
11	BC2	SOFTWARE	PRO A:47 , SER A:48 , TRP A:161 , GLU A:176 , CYS A:177 , GLY A:182 , THR A:183 , THR A:184 , ACT A:503	BINDING SITE FOR RESIDUE ACT A 507
12	BC3	SOFTWARE	ARG A:19 , TYR A:171 , HOH A:1002 , HOH A:1165	BINDING SITE FOR RESIDUE ACT A 508
13	BC4	SOFTWARE	SER A:17 , ASP A:90 , CYS A:91 , PHE A:126 , SER A:128 , TRP A:185 , CYS A:187 , ASP A:230 , CL A:301 , HOH A:1147 , HOH A:1148	BINDING SITE FOR RESIDUE GOL A 601
14	BC5	SOFTWARE	TYR A:20 , ASN A:156 , ASP A:230 , GLU A:231 , ILE A:243	BINDING SITE FOR RESIDUE GOL A 602
15	BC6	SOFTWARE	ALA A:16 , GLU A:31 , GLU A:35 , TYR A:186 , HOH A:1152	BINDING SITE FOR RESIDUE GOL A 603
16	BC7	SOFTWARE	HIS A:93 , THR A:94 , ASN A:139 , LYS A:166	BINDING SITE FOR RESIDUE GOL A 604
17	BC8	SOFTWARE	CYS A:91 , GLY A:92 , VAL A:119 , HOH A:1033 , HOH A:1082	BINDING SITE FOR RESIDUE GOL A 605

SS Bonds (8, 8)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:228
 aligned with MIC1_TOXGO | O00834 from UniProtKB/Swiss-Prot  Length:456

    Alignment length:231
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258 
           MIC1_TOXGO    29 HSPASGRYIQQMLDQRCQEIAAELCQSGLRKMCVPSSRIVARNAVGITHQNTLQWRCFDTASLLESNQENNGVNCVDDCGHTIPCPGGVHRQNSNHATRHEILSKLVEEGVQRFCSPYQASANKYCNDKFPGTIARRSKGFGNNVEVAWRCYEKASLLYSVYAECASNCGTTWYCPGGRRGTSTELDKRHYTEEEGIRQAIGSVDSPCSEVEVCLPKDENPPLCLDESGQI 259
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhh.hhhhh.hhh.eeeeee.........eeeeee.hhh....---.eeeee.....eeeeeee.......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeeeeeee.hhheeeeeeeee.....eeeeeee.....hhhhh.eeehhhhhhhhhhh........eeee.......eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f5e A  13 HSPASGRYIQQmLDQRCQEIAAELCQSGLRKmCVPSSRIVARNAVGITHQNTLQWRCFDTASLLESN---NGVNCVDDCGHTIPCPGGVHRQNSNHATRHEILSKLVEEGVQRFCSPYQASANKYCNDKFPGTIARRSKGFGNNVEVAWRCYEKASLLYSVYAECASNCGTTWYCPGGRRGTSTELDKRHYTEEEGIRQAIGSVDSPCSEVEVCLPKDENPPLCLDESGQI 243
                                    22 |      32        42 |      52        62        72      |  -|       92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242 
                                      24-MSE              44-MSE                             79  83

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (MIC1_TOXGO | O00834)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0020009	microneme	A small, elongated secretory organelle that forms part of the apical complex, located along the main axis of an apicomplexan parasite cell within the extreme apical region and at the periphery under the inner membrane complex. Of the specialized secretory compartments identified in apicomplexans, micronemes discharge their contents first, during initial contact of the parasite's apical pole with the host cell surface. Micronemal proteins function during parasite attachment and penetration into the target cell.

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