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(-) Description

Title :  THE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE N(6')ACETYLTRANSFERASE FROM LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1.
 
Authors :  K. Tan, R. Wu, V. Perez, R. Jedrzejczak, A. Joachimiak, Midwest Center Structural Genomics (Mcsg)
Date :  03 Nov 08  (Deposition) - 18 Nov 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Apc60744, Aminoglycoside N(6')Acetyltransferase, Legionella Pneumophila Subsp. Pneumophila, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg Str. Philadelphia 1, , Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, R. Wu, V. Perez, R. Jedrzejczak, A. Joachimiak
The Crystal Structure Of Aminoglycoside N(6')Acetyltransferase From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMINOGLYCOSIDE N(6')ACETYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21
    Expression System Vector Type: PLASMID
    Gene: AACA4, LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA, LPG0979
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA
    Organism Taxid: 272624
    Strain: STR. PHILADELPHIA 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 13)

Asymmetric/Biological Unit (6, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CHX1Ligand/IonCYCLOHEXANE
3EDO1Ligand/Ion1,2-ETHANEDIOL
4FMT4Ligand/IonFORMIC ACID
5MSE5Mod. Amino AcidSELENOMETHIONINE
6PO41Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:11 , LYS A:106 , GLY A:107 , ACT A:181 , HOH A:189 , HOH A:230BINDING SITE FOR RESIDUE PO4 A 180
2AC2SOFTWAREARG A:11 , ASP A:102 , LYS A:106 , LEU A:108 , ARG A:137 , PO4 A:180 , HOH A:263BINDING SITE FOR RESIDUE ACT A 181
3AC3SOFTWAREASP A:95 , LEU A:96 , PHE A:97 , TYR A:142 , HOH A:197BINDING SITE FOR RESIDUE CHX A 182
4AC4SOFTWAREHIS A:39 , GLY A:40 , ASP A:41 , TRP A:157 , HOH A:202BINDING SITE FOR RESIDUE FMT A 183
5AC5SOFTWAREGLU A:9 , PHE A:10 , PHE A:12 , LYS A:15BINDING SITE FOR RESIDUE FMT A 184
6AC6SOFTWAREGLY A:27BINDING SITE FOR RESIDUE FMT A 185
7AC7SOFTWAREGLY A:107 , LEU A:108 , HOH A:189 , HOH A:246BINDING SITE FOR RESIDUE FMT A 186
8AC8SOFTWAREARG A:137 , ALA A:138 , TYR A:142 , HOH A:217 , HOH A:253BINDING SITE FOR RESIDUE EDO A 187

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:13 -A:13

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3F5B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F5B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F5B)

(-) Exons   (0, 0)

(no "Exon" information available for 3F5B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
 aligned with Q5ZWV6_LEGPH | Q5ZWV6 from UniProtKB/TrEMBL  Length:179

    Alignment length:178
                              1                                                                                                                                                                               
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168        
         Q5ZWV6_LEGPH     - --MMIKASTNEFRFCFKQMNKSQHELVLGWIHQPHINEWLHGDGLSNTIKDLHEFLNDGKPWATHWIAYDNEIPFAYLITSEIEKSEEYPDGAVTLDLFICRLDYIGKGLSVQMIHEFILSQFSDTKIVLINPEISNERAVHVYKKAGFEIIGEFIASWHPVPHYKMKLCIEDLKKQR 176
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3f5b      A00 A:-1-176  [code=3.40.630.30, no name defined]                                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....------...eeeee.hhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhh......eeeeeee..eeeeeeeeeee.........eeeeeeee.hhhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh.eeeeeeee..eeeeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f5b A  -1 NAmm------EFRFCFKQmNKSQHELVLGWIHQPHINEWLHGDGLSNTIKDLHEFLNDGKPWATHWIAYDNEIPFAYLITSEIEKSEEYPDGAVTLDLFICRLDYIGKGLSVQmIHEFILSQFSDTKIVLINPEISNERAVHVYKKAGFEIIGEFIASWHPVPHYKmKLCIEDLKKQR 176
                              ||     -|       18        28        38        48        58        68        78        88        98       108   |   118       128       138       148       158      |168        
                              ||      9      17-MSE                                                                                        112-MSE                                              165-MSE       
                              1-MSE                                                                                                                                                                           
                               2-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3F5B)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F5B)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5ZWV6_LEGPH | Q5ZWV6)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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