3EZ6 - JenaLib

Title :   STRUCTURE OF PARA-ADP COMPLEX:TETRAGONAL FORM

Authors :   M. A. Schumacher

Date :   22 Oct 08 (Deposition) - 02 Jun 09 (Release) - 05 May 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.58

Chains :   Asym./Biol. Unit : A,B

Keywords :   Partition, Dna Binding, Winged-Hth, Segregation, Plasmid, Plasmid Partition, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. D. Dunham, W. Xu, B. E. Funnell, M. A. Schumacher
Structural Basis For Adp-Mediated Transcriptional Regulation By P1 And P7 Para.
Embo J. V. 28 1792 2009
PubMed-ID: 19461582 | Reference-DOI: 10.1038/EMBOJ.2009.120

Compounds

Molecule 1 - PLASMID PARTITION PROTEIN A
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15-B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PARA
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Structural Features

Chains, Units

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 4)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	2	Ligand/Ion	MAGNESIUM ION

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:118 , GLY A:119 , VAL A:120 , SER A:121 , LYS A:122 , THR A:123 , VAL A:124 , LYS A:316 , PRO A:344 , ARG A:345 , LEU A:346 , PHE A:349 , GLU A:350 , MG A:399 , HOH A:544 , HOH A:577 , HOH A:600 , HOH A:676	BINDING SITE FOR RESIDUE ADP A 501
2	AC2	SOFTWARE	THR A:123 , ASP A:152 , ASP A:251 , SER A:252 , ADP A:501 , HOH A:600	BINDING SITE FOR RESIDUE MG A 399
3	AC3	SOFTWARE	GLY B:118 , GLY B:119 , VAL B:120 , SER B:121 , LYS B:122 , THR B:123 , VAL B:124 , LYS B:316 , PRO B:344 , ARG B:345 , LEU B:346 , PHE B:349 , GLU B:350 , MG B:399 , HOH B:402 , HOH B:537 , HOH B:582	BINDING SITE FOR RESIDUE ADP B 502
4	AC4	SOFTWARE	LYS B:122 , THR B:123 , ASP B:152 , ADP B:502 , HOH B:582	BINDING SITE FOR RESIDUE MG B 399

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:388
 aligned with PARA_ECOLX | P07620 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:394
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
           PARA_ECOLX     5 SQLHKVAQRANRMLNVLTEQVQLQKDELHANEFYQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFGGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIRSN 398
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh------......hhhhhhhh...hhhhhhhhhhhhhhh.....eee....eee..hhhhhhhhhhhh...hhhhh....eeeee.......hhhhhhhhhhhhhhh...hhhhh..eeeeee...hhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhhhh.ee.....eeee....hhhhhhhhhhhhhhhhh......hhhhhhhhhhhh....eeeeee....hhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ez6 A   5 SQLHKVAQRANRMLNVLTEQVQLQK------EFYQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFGGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIRSN 398
                                    14        24    |    - |      44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
                                                   29     36

Chain B from PDB  Type:PROTEIN  Length:394
 aligned with PARA_ECOLX | P07620 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:394
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
           PARA_ECOLX     5 SQLHKVAQRANRMLNVLTEQVQLQKDELHANEFYQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFGGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIRSN 398
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh......hhhhh...ee.hhhhhh...hhhhhhhhhhhhhhh...............eehhhhhhhhhhhh...hhhhhh...eeeee.......hhhhhhhhhhhhhhhh..hhhhh..eeeee....hhhhhhhh..........hhhhhhhhh.hhhhhhhhh.ee.....eeee....hhhhhhhhhhhhhhhhh......hhhhhhhhhhhh....eeeee.....hhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ez6 B   5 SQLHKVAQRANRMLNVLTEQVQLQKDELHANEFYQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKSDYDFILVDSGPHLDAFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKADHKYCHSLAKEVFGGDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIRSN 398
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

Asymmetric/Biological Unit(show GO term definitions)

Chain A,B (PARA_ECOLX | P07620)

molecular function
	GO:0042802	identical protein binding
biological process
	GO:0030541	plasmid partitioning

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

3ez2	PARTITION PROTEIN-ADP COMPLEX
3ez7	APO FORM IN SPACE GROUP I4122
3ez9	MG BOUND PARTITIONING PROTEIN A FROM YERSINIA PESTIS
3ezf	PARTITIONING PROTEIN A FROM YERSINIA PESTIS

Description