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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE DNA BINDING PROTEIN FROM SILICIBACTER POMEROYI
 
Authors :  R. Zhang, H. Li, L. Freeman, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)
Date :  10 Oct 08  (Deposition) - 25 Nov 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Binding Protein, Structural Genomics, Psi2, Mcsg, Protein Structure Initiative, Midwest Center For Structural Genomics, Dna- Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, H. Li, L. Freeman, A. Joachimiak
The Crystal Structure Of The Dna Binding Protein From Silicibacter Pomeroyi
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SILICIBACTER POMEROYI
    Organism Taxid: 89184
    Strain: DSS-3

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:85
 aligned with Q5LU41_RUEPO | Q5LU41 from UniProtKB/TrEMBL  Length:84

    Alignment length:85
                              1                                                                                  
                              |      8        18        28        38        48        58        68        78     
          Q5LU41_RUEPO    - --MTKTLRTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLDVVSEIVATIAEGRAQ 83
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3eusA00 A:-1-83 lambda repressor-like DNA-binding domains                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                  3eus A -1 QAMTKTLRTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLDVVSEIVATIAEGRAQ 83
                                     8        18        28        38        48        58        68        78     


Chain B from PDB  Type:PROTEIN  Length:77
 aligned with Q5LU41_RUEPO | Q5LU41 from UniProtKB/TrEMBL  Length:84

    Alignment length:77
                                    15        25        35        45        55        65        75       
          Q5LU41_RUEPO    6 RTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLDVVSEIVATIAEGRA 82
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains 3eusB00 B:6-82 lambda repressor-like DNA-binding domains                      CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3eus B  6 RTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLDVVSEIVATIAEGRA 82
                                    15        25        35        45        55        65        75
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3EUS)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3EUS)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q5LU41_RUEPO | Q5LU41)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

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