3EU9 - JenaLib

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Title :   THE ANKYRIN REPEAT DOMAIN OF HUNTINGTIN INTERACTING PROTEIN 14

Authors :   T. Gao, R. E. Collins, J. R. Horton, R. Zhang, X. Zhang, X. Cheng

Date :   09 Oct 08 (Deposition) - 23 Jun 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.99

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)
Biol. Unit 2: A,C  (1x)

Keywords :   Epigenetics; Ankyrin Repeats; Methyllyine Binding; Huntingtin Interacting Protein 14, Acyltransferase, Ank Repeat, Cytoplasmic Vesicle, Golgi Apparatus, Membrane, Metal-Binding, Oncogene, Phosphoprotein, Transferase, Transmembrane, Zinc-Finger, Protein Binding, Methyl-Lysine-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Gao, R. E. Collins, J. R. Horton, X. Zhang, R. Zhang, A. Dhayalan, R. Tamas, A. Jeltsch, X. Cheng
The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Contains A Surface Aromatic Cage, A Potential Site For Methyl-Lysine Binding.
Proteins V. 76 772 2009
PubMed-ID: 19434754 | Reference-DOI: 10.1002/PROT.22452

Molecule 1 - HUNTINGTIN-INTERACTING PROTEIN 14
	Chains	:	A, B, C
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PXC650
	Expression System Taxid	:	562
	Expression System Vector Type	:	PET28B
	Fragment	:	ANKYRIN REPEATS
	Gene	:	ZDHHC17, HIP14, HIP3, HYPH, KIAA0946, HSPC294
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HIP14, PALMITOYLTRANSFERASE ZDHHC17, ZINC FINGER DHHC DOMAIN-CONTAINING PROTEIN 17, DHHC-17, HUNTINGTIN-INTERACTING PROTEIN 3, HUNTINGTIN-INTERACTING PROTEIN H, HUNTINGTIN YEAST PARTNER H, PUTATIVE NF-KAPPA-B-ACTIVATING PROTEIN 205, PUTATIVE MAPK-ACTIVATING PROTEIN PM11

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C
Biological Unit 2 (1x)	:	A		C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 10)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	HIS	1	Mod. Amino Acid	HISTIDINE
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 20)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL
2	HIS	2	Mod. Amino Acid	HISTIDINE
3	SO4	14	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 8)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	HIS	1	Mod. Amino Acid	HISTIDINE
3	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:189 , HIS A:224 , HIS C:224 , LEU C:234 , HOH C:491 , HOH C:493	BINDING SITE FOR RESIDUE HIS A 322
02	AC2	SOFTWARE	HIS B:202 , GLY B:236 , ASN B:237 , THR B:238 , THR B:239 , HOH B:376 , ARG C:281 , HOH C:541	BINDING SITE FOR RESIDUE SO4 B 322
03	AC3	SOFTWARE	HIS A:276 , ARG B:72 , LEU B:76	BINDING SITE FOR RESIDUE SO4 B 323
04	AC4	SOFTWARE	ARG C:133	BINDING SITE FOR RESIDUE GOL C 449
05	AC5	SOFTWARE	HOH A:410 , VAL C:215 , SER C:216 , VAL C:217 , ASN C:218	BINDING SITE FOR RESIDUE GOL C 450
06	AC6	SOFTWARE	SO4 A:325 , GLY C:168 , THR C:170 , SER C:171 , HOH C:464 , HOH C:494 , HOH C:534	BINDING SITE FOR RESIDUE SO4 C 451
07	AC7	SOFTWARE	ARG C:268 , ASN C:270 , MET C:273	BINDING SITE FOR RESIDUE SO4 C 452
08	AC8	SOFTWARE	MET A:50 , THR A:51 , HOH A:388 , TYR B:67 , HIS C:276	BINDING SITE FOR RESIDUE SO4 A 323
09	AC9	SOFTWARE	ARG A:208 , ASN C:101 , HIS C:136 , HOH C:480	BINDING SITE FOR RESIDUE SO4 A 324
10	BC1	SOFTWARE	HIS A:169 , THR A:170 , SER A:171 , HOH A:414 , HOH A:433 , HOH A:449 , HOH A:450 , SO4 C:451	BINDING SITE FOR RESIDUE SO4 A 325

(no "SS Bond" information available for 3EU9)

Asymmetric Unit

No.	Residues
1	Asp A:205	-	Pro A:206
2	Asp B:205	-	Pro B:206
3	Asp C:205	-	Pro C:206

(no "SAP(SNP)/Variant" information available for 3EU9)

Asymmetric Unit (2, 18)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	ZDH17_HUMAN	64-277	3	A:64-277 B:64-277 C:64-277
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	ZDH17_HUMAN	89-121 123-155 156-188 189-222 224-256	15	A:89-121 B:89-121 C:89-121 A:123-155 B:123-155 C:123-155 A:156-188 B:156-188 C:156-188 A:189-222 B:189-222 C:189-222 A:224-256 B:224-256 C:224-256

Biological Unit 1 (2, 36)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	ZDH17_HUMAN	64-277	6	A:64-277 B:64-277 C:64-277
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	ZDH17_HUMAN	89-121 123-155 156-188 189-222 224-256	30	A:89-121 B:89-121 C:89-121 A:123-155 B:123-155 C:123-155 A:156-188 B:156-188 C:156-188 A:189-222 B:189-222 C:189-222 A:224-256 B:224-256 C:224-256

Biological Unit 2 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	ZDH17_HUMAN	64-277	2	A:64-277 - C:64-277
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	ZDH17_HUMAN	89-121 123-155 156-188 189-222 224-256	10	A:89-121 - C:89-121 A:123-155 - C:123-155 A:156-188 - C:156-188 A:189-222 - C:189-222 A:224-256 - C:224-256

(no "Exon" information available for 3EU9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:233
 aligned with ZDH17_HUMAN | Q8IUH5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:234
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279    
          ZDH17_HUMAN    50 KTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 283
               SCOP domains d3eu9a_ A: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhh....hhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhhhh-. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --------------ANK_REP_REGION  PDB: A:64-277 UniProt: 64-277                                                                                                                                                                         ------ PROSITE (1)
                PROSITE (2) ---------------------------------------ANK_REPEAT  PDB: A:89-121        -ANK_REPEAT  PDB: A:123-155       ANK_REPEAT  PDB: A:156-188       ANK_REPEAT  PDB: A:189-222        -ANK_REPEAT  PDB: A:224-256       --------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3eu9 A  50 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR-H 322
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 | |
                                                                                                                                                                                                                                                                 281 |
                                                                                                                                                                                                                                                                   322

Chain B from PDB  Type:PROTEIN  Length:227
 aligned with ZDH17_HUMAN | Q8IUH5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:227
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       
          ZDH17_HUMAN    53 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 279
               SCOP domains d3eu9b_ B: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhh....hhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------ANK_REP_REGION  PDB: B:64-277 UniProt: 64-277                                                                                                                                                                         -- PROSITE (1)
                PROSITE (2) ------------------------------------ANK_REPEAT  PDB: B:89-121        -ANK_REPEAT  PDB: B:123-155       ANK_REPEAT  PDB: B:156-188       ANK_REPEAT  PDB: B:189-222        -ANK_REPEAT  PDB: B:224-256       ----------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eu9 B  53 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 279
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272

Chain C from PDB  Type:PROTEIN  Length:226
 aligned with ZDH17_HUMAN | Q8IUH5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:226
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278      
          ZDH17_HUMAN    59 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 284
               SCOP domains d3eu9c_ C: automated matches                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhh....hhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----ANK_REP_REGION  PDB: C:64-277 UniProt: 64-277                                                                                                                                                                         ------- PROSITE (1)
                PROSITE (2) ------------------------------ANK_REPEAT  PDB: C:89-121        -ANK_REPEAT  PDB: C:123-155       ANK_REPEAT  PDB: C:156-188       ANK_REPEAT  PDB: C:189-222        -ANK_REPEAT  PDB: C:224-256       ---------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eu9 C  59 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 284
                                    68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: beta-hairpin-alpha-hairpin repeat (81)

Superfamily: Ankyrin repeat (79)

Family: automated matches (19)

Protein domain: automated matches (19)

Human (Homo sapiens) [TaxId: 9606] (15)

1a	d3eu9a_	A:
1b	d3eu9b_	B:
1c	d3eu9c_	C:

(no "CATH Domain" information available for 3EU9)

(no "Pfam Domain" information available for 3EU9)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (ZDH17_HUMAN | Q8IUH5)

molecular function
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0015095	magnesium ion transmembrane transporter activity	Enables the transfer of magnesium (Mg) ions from one side of a membrane to the other.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016409	palmitoyltransferase activity	Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019706	protein-cysteine S-palmitoyltransferase activity	Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule.
	GO:0004871	signal transducer activity	Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0042953	lipoprotein transport	The directed movement of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:1903830	magnesium ion transmembrane transport	The directed movement of magnesium ion across a membrane.
	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
	GO:0018345	protein palmitoylation	The covalent attachment of a palmitoyl group to a protein.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0030660	Golgi-associated vesicle membrane	The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0030659	cytoplasmic vesicle membrane	The lipid bilayer surrounding a cytoplasmic vesicle.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	Cis Peptide Bonds
		Asp A:205 - Pro A:206	[ RasMol ]
		Asp B:205 - Pro B:206	[ RasMol ]
		Asp C:205 - Pro C:206	[ RasMol ]

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	3eu9
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(no "Entries Sharing at Least One Protein Chain" available for 3EU9)

3b95	THE ANKYRIN REPEATS OF G9A-LIKE PROTEIN (GLP)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 18)

Exons (0, 0)

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Gene Ontology (24, 24)

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