3EOH - JenaLib

Title :   REFINED GROUP II INTRON STRUCTURE

Authors :   N. Toor, K. Rajashankar, K. S. Keating, A. M. Pyle

Date :   26 Sep 08 (Deposition) - 28 Oct 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.12

Chains :   Asym./Biol. Unit : A,B

Keywords :   Rna, Ribonucleic Acid, Intron, Group Ii, Exon (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Toor, K. Rajashankar, K. S. Keating, A. M. Pyle
Structural Basis For Exon Recognition By A Group Ii Intron.
Nat. Struct. Mol. Biol. V. 15 1221 2008
PubMed-ID: 18953333 | Reference-DOI: 10.1038/NSMB.1509
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 40)

Sites (32, 32)

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	C A:119 , A A:174 , U A:238 , G A:239 , MG A:424	BINDING SITE FOR RESIDUE MG A 413
02	AC2	SOFTWARE	G A:374 , U A:375 , C A:377 , U B:4 , U B:5	BINDING SITE FOR RESIDUE MG B 7
03	AC3	SOFTWARE	C A:358 , G A:359 , C A:377 , U B:5	BINDING SITE FOR RESIDUE MG A 414
04	AC4	SOFTWARE	G A:107	BINDING SITE FOR RESIDUE MG A 415
05	AC5	SOFTWARE	A A:110 , G A:111	BINDING SITE FOR RESIDUE MG A 416
06	AC6	SOFTWARE	C A:372	BINDING SITE FOR RESIDUE MG A 417
07	AC7	SOFTWARE	G A:284	BINDING SITE FOR RESIDUE MG A 419
08	AC8	SOFTWARE	G A:46	BINDING SITE FOR RESIDUE MG A 420
09	AC9	SOFTWARE	A A:61	BINDING SITE FOR RESIDUE MG A 421
10	BC1	SOFTWARE	U A:66 , A A:67	BINDING SITE FOR RESIDUE MG A 422
11	BC2	SOFTWARE	C A:116 , G A:117	BINDING SITE FOR RESIDUE MG A 423
12	BC3	SOFTWARE	G A:239 , MG A:413	BINDING SITE FOR RESIDUE MG A 424
13	BC4	SOFTWARE	A A:154 , G A:155 , G A:156	BINDING SITE FOR RESIDUE MG A 425
14	BC5	SOFTWARE	G A:170	BINDING SITE FOR RESIDUE MG A 426
15	BC6	SOFTWARE	A A:184	BINDING SITE FOR RESIDUE MG A 427
16	BC7	SOFTWARE	A A:186	BINDING SITE FOR RESIDUE MG A 428
17	BC8	SOFTWARE	A A:181 , A A:223	BINDING SITE FOR RESIDUE MG A 429
18	BC9	SOFTWARE	G A:135 , G A:136	BINDING SITE FOR RESIDUE MG A 430
19	CC1	SOFTWARE	U A:285	BINDING SITE FOR RESIDUE MG A 433
20	CC2	SOFTWARE	C A:286 , A A:287 , G A:288	BINDING SITE FOR RESIDUE MG A 434
21	CC3	SOFTWARE	A A:355 , A A:356	BINDING SITE FOR RESIDUE MG A 435
22	CC4	SOFTWARE	G A:288 , C A:358 , G A:359 , C A:377	BINDING SITE FOR RESIDUE MG A 436
23	CC5	SOFTWARE	C A:360 , G A:373 , G A:374	BINDING SITE FOR RESIDUE MG A 437
24	CC6	SOFTWARE	G A:369 , A A:370	BINDING SITE FOR RESIDUE MG A 438
25	CC7	SOFTWARE	U A:4 , G A:107 , U A:375 , A A:376	BINDING SITE FOR RESIDUE MG A 439
26	CC8	SOFTWARE	G A:320 , G A:321	BINDING SITE FOR RESIDUE MG A 440
27	CC9	SOFTWARE	G A:269	BINDING SITE FOR RESIDUE MG A 441
28	DC1	SOFTWARE	A A:67 , G A:68	BINDING SITE FOR RESIDUE MG A 442
29	DC2	SOFTWARE	C A:86 , G A:87 , A A:95 , U A:96 , G A:97	BINDING SITE FOR RESIDUE K A 444
30	DC3	SOFTWARE	G A:275	BINDING SITE FOR RESIDUE K A 448
31	DC4	SOFTWARE	U A:365	BINDING SITE FOR RESIDUE K A 449
32	DC5	SOFTWARE	U A:4 , G A:5 , A A:376	BINDING SITE FOR RESIDUE K A 450

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:RNA  Length:381
                                                                                                                                                                                                                                                                                                                                                                                                                             
                 3eoh A   3 GUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGGCUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUAGAGUAAAUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCUCAGGGGAAGGACGGAACAAGUAUGGCGUUCGCGCCUAAGCUUGAACCGCCGUAUACCGAACGGUACGUACGGUGGUGUG 390
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212  ||   224       234       244       254       264       274       284       294       304 ||    319       329       339       349       359       369       379       389 
                                                                                                                                                                                                                                              215|                                                                                     306|                                                                              
                                                                                                                                                                                                                                               218                                                                                      312

Chain B from PDB  Type:RNA  Length:6
                                      
                 3eoh B   1 UUAUUA   6

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

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